[gmx-users] make a rigid nanoparticle (internally freeze body while it can move as a rigid body )

Samieegohar, Mohammadreza mohammadreza.samiee at Howard.edu
Tue May 22 17:14:36 CEST 2018


Hi
I need to make a rigid Gold nanoparticle to run a coarse grained simulation. my gold nanoparticle will penetrate in a lipid membrane
I have built the initial structure by Material studio. This nanoparticle must be a internally freeze body while it can move as a rigid body
My question is , how can I make a rigid particle in Gromacs ? the particle should move as whole body in all directions while all of the atoms are fix

Thanks


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