[gmx-users] Solvation of the bilayer

[Amali Guruge]

Dear Gromacs users,

I have a bilayer in xy plane. I tried to solvate the bilayer
(sur_bilayer.pdb) with water molecules using gmx solvate. I used the
command;
gmx solvate -cp sur_bilayer.pdb -maxsol 28197 -o sur_water_bilayer.pdb

However, water molecules are not distributed in the hydrophilic layers in
the xy plane as I wanted. How can I solve this problem?


Thank you.

<name.surname at monash.edu>

<name.surname at monash.edu>