[gmx-users] calculation of distance between the center of geometry of two proteins

[Soham Sarkar]

Delete from -select.. previous are ok

On Mon, 28 May 2018, 3:12 pm SHAHEE ISLAM, <islamshahee at gmail.com> wrote:

> hi,
> to calculate the distance between the center of geometry of two
> proteins, i am using this command
> g_dist -f md_0_1_noPBC.xtc -s dynamic.tpr -n index.ndx -o distave.xvg
> -select 'cog of group "Chain_A" plus cog of group "Chain_B"'
> Invalid command line argument:
> -select
> here in this index file the two chain group name Chain_A and Chain_B
> how i will select the two chain.
>
> thanking you
> shahee islam
> university of calcutta
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