[gmx-users] backbone contact analysis of martini cg protein

Alex nedomacho at gmail.com
Wed May 30 08:39:59 CEST 2018

Some respect for this user board would be nice.

If there is anything unclear about how gmx make_ndx works, please ask a 
specific question instead of posting the same very unclear thing over 
and over. Noone will be able to help with your question, because it 
requires precise knowledge of your system and what must be included in 
the index to calculate what you need. You're basically asking others to 
do your job for you.


On 5/29/2018 11:49 PM, SHAHEE ISLAM wrote:
> can anyone please give me some idea.
> On 5/30/18, SHAHEE ISLAM <islamshahee at gmail.com> wrote:
>> hi,
>> i want to calculate the contact between the backbone of protein(it is
>> a coarse grained protein using martini force field).how i will make
>> .ndx file to calculate the contact.
>> thanking you
>> shahee islam
>> university of calcutta

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