[gmx-users] VMD visualization of clusters

Benson Muite benson.muite at ut.ee
Mon Nov 19 15:15:32 CET 2018

Hi Rahma,

Have you tried any other visualization programs? Is there an example
file one could try for visualization?


On 11/19/18 2:57 PM, Rahma Dahmani wrote:
> Hi GMX users,
> After visualization of one of my clusters generated by g-cluster command in
> gromacs , i couldn't change the representation type in VMD from lines to
> new cartoon or secondary structure....
> so i am wondering if this is related to the structure of cluster ? ... why
> i can visualize the cluster only in lines ?
> Thank you!

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