November 2018 Archives by author

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Starting: Thu Nov 1 00:46:22 CET 2018
Ending: Fri Nov 30 23:07:09 CET 2018
Messages: 465

[gmx-users] 5. Re: 3. Re: Strange pullx coordinates (PMF calculations) CROUZY Serge 119222
[gmx-users] 4. Re: 5. Re: 3. Re: Strange pullx coordinates (PMF CROUZY Serge 119222
[gmx-users] Is there any way to count the number of water molecules around a ligand during simulation of its binding pathway? Hassan Aaryapour
[gmx-users] Periodic saving of checkpoint file Mark Abraham
[gmx-users] Mpirun continuing mdrun Mark Abraham
[gmx-users] LINCS warning Mark Abraham
[gmx-users] Vacuum simulation of a peptide feasible using GROMACS? Mark Abraham
[gmx-users] Unable to generate .rtp file from gro and pdb file. Mark Abraham
[gmx-users] Unable to generate .rtp file from gro and pdb file. Mark Abraham
[gmx-users] ali.mofrad at mail.utoronto.ca Mark Abraham
[gmx-users] Do need to recompile GROMACS with hardware changes Mark Abraham
[gmx-users] Setting rcon according to system Mark Abraham
[gmx-users] Subject: Re: Group WAT referenced in the .mdp file was not found in the index file Mark Abraham
[gmx-users] Subject: Re: Group WAT referenced in the .mdp file was not found in the index file Mark Abraham
[gmx-users] dssp excutable-error Mark Abraham
[gmx-users] Unable to generate .rtp file from gro and pdb file. Mark Abraham
[gmx-users] Unable to generate .rtp file from gro and pdb file. Mark Abraham
[gmx-users] Running GPU issue Mark Abraham
[gmx-users] Running GPU issue Mark Abraham
[gmx-users] Building Gromacs Mark Abraham
[gmx-users] Building Gromacs Mark Abraham
[gmx-users] Global minimum Mark Abraham
[gmx-users] Global minimum Mark Abraham
[gmx-users] Insert Molecules Settings Mark Abraham
[gmx-users] Insert Molecules Settings Mark Abraham
[gmx-users] Error: Cannot set thread affinities on the current platform Mark Abraham
[gmx-users] Error: Cannot set thread affinities on the current platform Mark Abraham
[gmx-users] LINCS warning Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 175, Issue 28 - start the simulation of the last stopping point. Mark Abraham
[gmx-users] Periodic saving of checkpoint file Mark Abraham
[gmx-users] Question about nsttcouple Mark Abraham
[gmx-users] Running GPU issue Mark Abraham
[gmx-users] Setting rcon according to system Mark Abraham
[gmx-users] Running GPU issue Mark Abraham
[gmx-users] Setting rcon according to system Mark Abraham
[gmx-users] Setting rcon according to system Mark Abraham
[gmx-users] Total Energy, g_energy Mark Abraham
[gmx-users] CHARMM36 GROMACS implementation Mark Abraham
[gmx-users] HELP Mark Abraham
[gmx-users] parallelizing gromacs2018.4 Mark Abraham
[gmx-users] Interaction energy Mark Abraham
[gmx-users] preparing input file for GPU Mark Abraham
[gmx-users] Gromacs 2018.3 Exceeding Memory Issue Mark Abraham
[gmx-users] Error while launching kernel pme_solve_kernel: invalid argument Mark Abraham
[gmx-users] Error while launching kernel pme_solve_kernel: invalid argument Mark Abraham
[gmx-users] Twin-range and rcoulomb error Mark Abraham
[gmx-users] Twin-range and rcoulomb error Mark Abraham
[gmx-users] Twin-range and rcoulomb error Mark Abraham
[gmx-users] Gromacs 2018.3 Exceeding Memory Issue Mark Abraham
[gmx-users] Running Grompp in reverse and backing up MD data Mark Abraham
[gmx-users] Running Grompp in reverse and backing up MD data Mark Abraham
[gmx-users] Running Grompp in reverse and backing up MD data Mark Abraham
[gmx-users] Running Grompp in reverse and backing up MD data Mark Abraham
[gmx-users] Running Grompp in reverse and backing up MD data Mark Abraham
[gmx-users] Running Grompp in reverse and backing up MD data Mark Abraham
[gmx-users] Query regarding protein topology constructed using -vsite hydrogen option. Abhishek Acharya
[gmx-users] parallelizing gromacs2018.4 Abhishek Acharya
[gmx-users] Query regarding protein topology constructed using -vsite hydrogen option. Abhishek Acharya
[gmx-users] pdb generator Momin Ahmad
[gmx-users] pdb generator Momin Ahmad
[gmx-users] pdb generator Momin Ahmad
[gmx-users] TOPOLOGY AND GRO FILE ATOMS NAME MISMATCH Ali Ahmed
[gmx-users] pdb generator Ali Ahmed
[gmx-users] pdb generator Ali Ahmed
[gmx-users] pdb generator Ali Ahmed
[gmx-users] ACPYPE not working. Alan
[gmx-users] ACPYPE not working. Alan
[gmx-users] ACPYPE not working. Alan
[gmx-users] ACPYPE not working. Alan
[gmx-users] gromacs.org_gmx-users Digest, Vol 174, Issue 87 Alex
[gmx-users] gromacs.org_gmx-users Digest, Vol 174, Issue 87 Alex
[gmx-users] gromacs.org_gmx-users Digest, Vol 174, Issue 87 Alex
[gmx-users] Crystal Simulation Alex
[gmx-users] Crystal Simulation Alex
[gmx-users] Crystal Simulation Alex
[gmx-users] Specificity Alex
[gmx-users] Sphericity Alex
[gmx-users] shameless self-promotion Alex
[gmx-users] How to fix graphite layers? Alex
[gmx-users] [CASS SPAM]Re: How to fix graphite layers? Alex
[gmx-users] [CASS SPAM]Re: [CASS SPAM]Re: How to fix graphite layers? Alex
[gmx-users] [CASS SPAM]Re: [CASS SPAM]Re: [CASS SPAM]Re: How to fix graphite layers? Alex
[gmx-users] TIP3P water Alex
[gmx-users] start the simulation of the last stopping point. Paul Bauer
[gmx-users] Printing only center of mass of during simulation Sudarshan Behera
[gmx-users] Fatal Error: Atom N not found in building block 1DA . . . Austin Biaggne
[gmx-users] HELP Emmanuel Broni
[gmx-users] Unexpected cudaStreamQuery failure: unspecified launch failure Michael Brunsteiner
[gmx-users] Glycine zwitterion parameters in Amber FF Pelin S Bulutoglu
[gmx-users] Periodic saving of checkpoint file Nicolas Cheron
[gmx-users] Periodic saving of checkpoint file Nicolas Cheron
[gmx-users] g++ compiling with gromacs library Kit Sang Chu
[gmx-users] g++ compiling with gromacs library Kit Sang Chu
[gmx-users] g++ compiling with gromacs library Kit Sang Chu
[gmx-users] g++ compiling with gromacs library Kit Sang Chu
[gmx-users] g++ compiling with gromacs library Kit Sang Chu
[gmx-users] conversion from amber (prmtop and inpcrd) to gromacs itp and gro Rahma Dahmani
[gmx-users] atomtype OW is not found Rahma Dahmani
[gmx-users] Topology include file "tip3p.itp" not found Rahma Dahmani
[gmx-users] Error in running energy minimization Rahma Dahmani
[gmx-users] Group WAT referenced in the .mdp file was not found in the index file Rahma Dahmani
[gmx-users] gromacs.org_gmx-users Digest, Vol 175, Issue 40 Rahma Dahmani
[gmx-users] Subject: Re: Group WAT referenced in the .mdp file was not found in the index file Rahma Dahmani
[gmx-users] how to keep the ligand inside water box Rahma Dahmani
[gmx-users] VMD visualization of clusters Rahma Dahmani
[gmx-users] Linear Interaction Energy Calculation (LIE) using gromacs Bhupendra Dandekar
[gmx-users] Linear Interaction Energy Calculation (LIE) using gromacs Bhupendra Dandekar
[gmx-users] thermostat Hosein Geraili Daronkola
[gmx-users] Opening PDB files in GROMACS on Windows using Cygwin Bratin Kumar Das
[gmx-users] conversion from amber (prmtop and inpcrd) to gromacs itp and gro Bratin Kumar Das
[gmx-users] Recovery simulation error Bratin Kumar Das
[gmx-users] Recovery simulation error Bratin Kumar Das
[gmx-users] Stacking Bratin Kumar Das
[gmx-users] Stacking Bratin Kumar Das
[gmx-users] Frozen groups lead to a high energy Sam David
[gmx-users] Frozen groups lead to a high energy Sam David
[gmx-users] GMX TRJCONV ERROR and GMX CHECK ERROR Budheswar Dehury
[gmx-users] Residue id of capped peptide getting changed when adding molecules Dilip.H.N
[gmx-users] Opening PDB files in GROMACS on Windows using Cygwin Neena Susan Eappen
[gmx-users] Opening PDB files in GROMACS on Windows using Cygwin Neena Susan Eappen
[gmx-users] Vacuum simulation of a peptide feasible using GROMACS? Neena Susan Eappen
[gmx-users] Input file for energy minimization for solvated system: Error Neena Susan Eappen
[gmx-users] Error: Cannot set thread affinities on the current platform Neena Susan Eappen
[gmx-users] Error: Cannot set thread affinities on the current platform Neena Susan Eappen
[gmx-users] pH Replica Exchange Reza Esmaeeli
[gmx-users] pH Replica Exchange Reza Esmaeeli
[gmx-users] 4th Advanced in silico Drug Design workshop in Olomouc Thomas Evangelidis
[gmx-users] Issues with specbond.dat for a HEME protein Matthew Fisher
[gmx-users] Adding an Oxygen into a Protein Heme Group; advice needed. Matthew Fisher
[gmx-users] Any ideas: Fatal error: Atom O in residue HEM XXX was not found in rtp entry while sorting atoms. Matthew Fisher
[gmx-users] Any ideas: Fatal error: Atom O in residue HEM XXX was not found in rtp entry while sorting atoms. Matthew Fisher
[gmx-users] Total Energy, g_energy Vito GENNA
[gmx-users] Free energy calculation KRISHNA PRASAD GHANTA
[gmx-users] Binding free energy calculation KRISHNA PRASAD GHANTA
[gmx-users] Calculation of Binding free energy by Gromacs KRISHNA PRASAD GHANTA
[gmx-users] Free energy calculation KRISHNA PRASAD GHANTA
[gmx-users] Binding Free energy calculation KRISHNA PRASAD GHANTA
[gmx-users] pdb generator Victor Rosas Garcia
[gmx-users] pcoupl Berendsen Gonzalez Fernandez, Cristina
[gmx-users] pcoupl Berendsen Gonzalez Fernandez, Cristina
[gmx-users] pcoupl Berendsen Gonzalez Fernandez, Cristina
[gmx-users] Twin-range and rcoulomb error Gonzalez Fernandez, Cristina
[gmx-users] Twin-range and rcoulomb error Gonzalez Fernandez, Cristina
[gmx-users] scp216.gro Kenny Goossens
[gmx-users] Error while launching kernel pme_solve_kernel: invalid argument Gschwend Grégoire
[gmx-users] Error while launching kernel pme_solve_kernel: invalid argument Gschwend Grégoire
[gmx-users] Is there any way to count the number of water molecules around a ligand during simulation of its binding pathway? João Henriques
[gmx-users] RMSF calculation Hermann, Johannes
[gmx-users] Non-symmetric PMF across lipid bilayer Jochen Hub
[gmx-users] Correct use of gmx traj -mol ? James
[gmx-users] Global minimum Shan Jayasinghe
[gmx-users] Bond Decomposition Error Wenjuan Jiang
[gmx-users] Interaction energy Nick Johans
[gmx-users] Interaction energy Nick Johans
[gmx-users] Interaction energy Nick Johans
[gmx-users] Building Gromacs Jasper Jordan
[gmx-users] Fixing the molecule in the centre of the micelle Alexey Kaa
[gmx-users] Is there any way to count the number of water molecules around a ligand during simulation of its binding pathway? Alexey Kaa
[gmx-users] ali.mofrad at mail.utoronto.ca Ali Kaazempur-Mofrad
[gmx-users] Force Field for Polymers Karpurmanjari Kakati
[gmx-users] Unable to generate .rtp file from gro and pdb file. Karpurmanjari Kakati
[gmx-users] Unable to generate .rtp file from gro and pdb file. Karpurmanjari Kakati
[gmx-users] Unable to generate .rtp file from gro and pdb file. Karpurmanjari Kakati
[gmx-users] Unable to generate .rtp file from gro and pdb file. Karpurmanjari Kakati
[gmx-users] System Charge in OPLS AA force field. Karpurmanjari Kakati
[gmx-users] System Charge in OPLS AA force field. Karpurmanjari Kakati
[gmx-users] Charge system simulation problem Karpurmanjari Kakati
[gmx-users] Charge system simulation problem Karpurmanjari Kakati
[gmx-users] Charge system simulation problem Karpurmanjari Kakati
[gmx-users] Charge system simulation problem Karpurmanjari Kakati
[gmx-users] System Charge in OPLS AA force field. Karpurmanjari Kakati
[gmx-users] System Charge in OPLS AA force field. Karpurmanjari Kakati
[gmx-users] Non-symmetric PMF across lipid bilayer Shreyas Kaptan
[gmx-users] generic hardware assembling for gromacs simulation Seketoulie Keretsu
[gmx-users] gromacs.org_gmx-users Digest, Vol 175, Issue 63 Seketoulie Keretsu
[gmx-users] generic hardware assembling for gromacs simulation Seketoulie Keretsu
[gmx-users] preparing input file for GPU Seketoulie Keretsu
[gmx-users] gromacs.org_gmx-users Digest, Vol 175, Issue 95 Seketoulie Keretsu
[gmx-users] mpirun problem Prabir Khatua
[gmx-users] ACPYPE not working. Ali Khodayari
[gmx-users] pdb2gmx fatal error Ali Khodayari
[gmx-users] pdb2gmx fatal error Ali Khodayari
[gmx-users] pdb2gmx fatal error Ali Khodayari
[gmx-users] make_ndx and assigning velocities Ali Khodayari
[gmx-users] stress-strain using pull code Ali Khodayari
[gmx-users] non-zero total charge Ali Khodayari
[gmx-users] non-zero total charge Ali Khodayari
[gmx-users] non-zero total charge Ali Khodayari
[gmx-users] Gromacs 2018.3 with CUDA - segmentation fault (core dumped) Krzysztof Kolman
[gmx-users] Gromacs 2018.3 with CUDA - segmentation fault (core dumped) Krzysztof Kolman
[gmx-users] Gromacs 2018.3 with CUDA - segmentation fault (core dumped) Krzysztof Kolman
[gmx-users] Fwd: Gromacs 2018.3 with CUDA - segmentation fault (core dumped) Krzysztof Kolman
[gmx-users] Running GPU issue Kovalskyy, Dmytro
[gmx-users] Running GPU issue Kovalskyy, Dmytro
[gmx-users] Running GPU issue Kovalskyy, Dmytro
[gmx-users] Running GPU issue Kovalskyy, Dmytro
[gmx-users] Running GPU issue Kovalskyy, Dmytro
[gmx-users] Running GPU issue Kovalskyy, Dmytro
[gmx-users] Best force Field for Protein Kovalskyy, Dmytro
[gmx-users] Running Grompp in reverse and backing up MD data Peter Kroon
[gmx-users] Running Grompp in reverse and backing up MD data Peter Kroon
[gmx-users] Running Grompp in reverse and backing up MD data Peter Kroon
[gmx-users] Error in running energy minimization Jissy Kuriappan
[gmx-users] Error in running energy minimization Jissy Kuriappan
[gmx-users] replica exchange umbrella sampling Alexander Kötter
[gmx-users] Non-symmetric PMF across lipid bilayer Per Larsson
[gmx-users] Gromacs 2018.3 Exceeding Memory Issue Peiyin Lee
[gmx-users] Gromacs 2018.3 Exceeding Memory Issue Peiyin Lee
[gmx-users] Crystal Surfaces in GROMACS Justin Lemkul
[gmx-users] Gmx distance Justin Lemkul
[gmx-users] NPT not working Justin Lemkul
[gmx-users] Regarding xpm2ps with a xpm file obtained from gmx densmap Justin Lemkul
[gmx-users] Gmx distance Justin Lemkul
[gmx-users] Fw: problem in extending MD in Gromacs 2018 Justin Lemkul
[gmx-users] Turn on/off residues in gromacs Justin Lemkul
[gmx-users] Gmx distance Justin Lemkul
[gmx-users] 5. Re: 3. Re: Strange pullx coordinates (PMF calculations) Justin Lemkul
[gmx-users] Unable to generate .rtp file from gro and pdb file. Justin Lemkul
[gmx-users] Regarding xpm2ps with a xpm file obtained from gmx densmap [update] and possible bug Justin Lemkul
[gmx-users] Question about nsttcouple Justin Lemkul
[gmx-users] atomtype OW is not found Justin Lemkul
[gmx-users] pdb2gmx fatal error Justin Lemkul
[gmx-users] combining multiple MD proteins, Justin Lemkul
[gmx-users] DispErsion correction Justin Lemkul
[gmx-users] Topology include file "tip3p.itp" not found Justin Lemkul
[gmx-users] pcoupl Berendsen Justin Lemkul
[gmx-users] DispErsion correction Justin Lemkul
[gmx-users] 4. Re: 5. Re: 3. Re: Strange pullx coordinates (PMF Justin Lemkul
[gmx-users] pdb2gmx fatal error Justin Lemkul
[gmx-users] Expansion system after NVT Equilibrium in Gromacs Justin Lemkul
[gmx-users] Input file for energy minimization for solvated system: Error Justin Lemkul
[gmx-users] Group WAT referenced in the .mdp file was not found in the index file Justin Lemkul
[gmx-users] atomtype OV not found Justin Lemkul
[gmx-users] Building Gromacs Justin Lemkul
[gmx-users] how to keep the ligand inside water box Justin Lemkul
[gmx-users] NPT not working Justin Lemkul
[gmx-users] pcoupl Berendsen Justin Lemkul
[gmx-users] Residue id of capped peptide getting changed when adding molecules Justin Lemkul
[gmx-users] Best force Field for Protein Justin Lemkul
[gmx-users] VMD visualization of clusters Justin Lemkul
[gmx-users] CHARMM36 GROMACS implementation Justin Lemkul
[gmx-users] Fatal Error: Atom N not found in building block 1DA . . . Justin Lemkul
[gmx-users] Average crystallographic angles for a triclinic box Justin Lemkul
[gmx-users] Any ideas: Fatal error: Atom O in residue HEM XXX was not found in rtp entry while sorting atoms. Justin Lemkul
[gmx-users] Average crystallographic angles for a triclinic box Justin Lemkul
[gmx-users] Best force Field for Protein Justin Lemkul
[gmx-users] Non-symmetric PMF across lipid bilayer Justin Lemkul
[gmx-users] Non-symmetric PMF across lipid bilayer Justin Lemkul
[gmx-users] Non-symmetric PMF across lipid bilayer Justin Lemkul
[gmx-users] Non-symmetric PMF across lipid bilayer Justin Lemkul
[gmx-users] g++ compiling with gromacs library Justin Lemkul
[gmx-users] g++ compiling with gromacs library Justin Lemkul
[gmx-users] Printing only center of mass of during simulation Justin Lemkul
[gmx-users] Implementation of drude simulation Justin Lemkul
[gmx-users] Interaction energy Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] free binding energy calculation Justin Lemkul
[gmx-users] sort_mol2_bonds.pl issues Justin Lemkul
[gmx-users] Mismatch between gromacs and python-networkx versions Justin Lemkul
[gmx-users] Charge system simulation problem Justin Lemkul
[gmx-users] pH Replica Exchange Justin Lemkul
[gmx-users] ionize flag Justin Lemkul
[gmx-users] Fwd: Mismatch between gromacs and python-networkx versions Justin Lemkul
[gmx-users] Interaction energy Justin Lemkul
[gmx-users] Interaction energy Justin Lemkul
[gmx-users] Parameterizing N-terminal capping Justin Lemkul
[gmx-users] Distance calculation Justin Lemkul
[gmx-users] Charge system simulation problem Justin Lemkul
[gmx-users] Extract frames from Trajectory Justin Lemkul
[gmx-users] Gromacs 2018.3 Exceeding Memory Issue Justin Lemkul
[gmx-users] Nonbonded interaction between two molecules Justin Lemkul
[gmx-users] Extract frames from Trajectory Justin Lemkul
[gmx-users] Distance calculation Justin Lemkul
[gmx-users] Running Grompp in reverse and backing up MD data Justin Lemkul
[gmx-users] Parameterizing N-terminal capping Justin Lemkul
[gmx-users] Stacking Justin Lemkul
[gmx-users] non-zero total charge Justin Lemkul
[gmx-users] Frozen groups lead to a high energy Justin Lemkul
[gmx-users] TIP3P water Justin Lemkul
[gmx-users] PME and solvation free energy for individual ions Justin Lemkul
[gmx-users] conversion from amber (prmtop and inpcrd) to gromacs itp and gro Qinghua Liao
[gmx-users] Open position: Join the Gromacs team to work on training, workflows, and industry collaborations Erik Lindahl
[gmx-users] GROMACS 2018.3 ansible playbook for wget, extract, build, install Darin Lory-External
[gmx-users] Do need to recompile GROMACS with hardware changes Darin Lory-External
[gmx-users] rdf coordination number over time (ns) Maria Luisa
[gmx-users] Position restraints with Martini force field ARNAB MUKHERJEE
[gmx-users] looking for NLE residue parametrization for charmm22-star forcefield Iuri Macocco
[gmx-users] Fw: problem in extending MD in Gromacs 2018 Ladan Mafakhe
[gmx-users] about using both Lennard Jones and Buckingham potential Santosh Kumar Meena
[gmx-users] about using both Lennard Jones and Buckingham potential Santosh Kumar Meena
[gmx-users] Parameter generation for covalently bonded ligands Rakesh Mishra
[gmx-users] Parameter generation Rakesh Mishra
[gmx-users] Assigning charge to closely related functional group Tushar Ranjan Moharana
[gmx-users] Opening PDB files in GROMACS on Windows using Cygwin Benson Muite
[gmx-users] Gromacs 2018.3 with CUDA - segmentation fault (core dumped) Benson Muite
[gmx-users] GROMACS 2018.3 ansible playbook for wget, extract, build, install Benson Muite
[gmx-users] GROMACS 2018.3 ansible playbook for wget, extract, build, install Benson Muite
[gmx-users] GROMACS 2018.3 ansible playbook for wget, extract, build, install Benson Muite
[gmx-users] generic hardware assembling for gromacs simulation Benson Muite
[gmx-users] VMD visualization of clusters Benson Muite
[gmx-users] IMAC enable GPU problem Benson Muite
[gmx-users] Error: Cannot set thread affinities on the current platform Benson Muite
[gmx-users] free binding energy calculation Benson Muite
[gmx-users] Non-symmetric PMF across lipid bilayer Chris Neale
[gmx-users] xpm2ps Mahdi Sobati Nezhad
[gmx-users] Extract frames from Trajectory Fernando Nunes
[gmx-users] Extract frames from Trajectory Fernando Nunes
[gmx-users] NPT not working Hanin Omar
[gmx-users] NPT not working Hanin Omar
[gmx-users] How to use rcon based on my system. Sergio Perez
[gmx-users] Setting rcon according to system Sergio Perez
[gmx-users] Setting rcon according to system Sergio Perez
[gmx-users] Setting rcon according to system Sergio Perez
[gmx-users] Setting rcon according to system Sergio Perez
[gmx-users] Mismatch between gromacs and python-networkx versions Francesco Pietra
[gmx-users] sort_mol2_bonds.pl issue Francesco Pietra
[gmx-users] sort_mol2_bonds.pl issues Francesco Pietra
[gmx-users] Mismatch between gromacs and python-networkx versions Francesco Pietra
[gmx-users] Fwd: Mismatch between gromacs and python-networkx versions Francesco Pietra
[gmx-users] scp216.gro Francesco Pietra
[gmx-users] scp216.gro Francesco Pietra
[gmx-users] mismatch sol.gro/topol.gro Francesco Pietra
[gmx-users] mismatch sol.gro/topol.gro Francesco Pietra
[gmx-users] Running Grompp in reverse and backing up MD data Thomas Piggot
[gmx-users] Running Grompp in reverse and backing up MD data Thomas Piggot
[gmx-users] Recovery simulation error Mario Andres Rodriguez Pineda
[gmx-users] Recovery simulation error (Bratin Kumar Das) Mario Andres Rodriguez Pineda
[gmx-users] Recovery simulation error (Bratin Kumar Das) Mario Andres Rodriguez Pineda
[gmx-users] Gromacs 2018.3 with CUDA - segmentation fault (core dumped) Szilárd Páll
[gmx-users] Gromacs 2018.3 with CUDA - segmentation fault (core dumped) Szilárd Páll
[gmx-users] generic hardware assembling for gromacs simulation Szilárd Páll
[gmx-users] mpirun problem Szilárd Páll
[gmx-users] mpirun problem Szilárd Páll
[gmx-users] Non-symmetric PMF across lipid bilayer Gmx QA
[gmx-users] Non-symmetric PMF across lipid bilayer Gmx QA
[gmx-users] Non-symmetric PMF across lipid bilayer Gmx QA
[gmx-users] Non-symmetric PMF across lipid bilayer Gmx QA
[gmx-users] Non-symmetric PMF across lipid bilayer Gmx QA
[gmx-users] Non-symmetric PMF across lipid bilayer Gmx QA
[gmx-users] Implementation of drude simulation Gonzalo Quezada
[gmx-users] Parameterizing N-terminal capping Raji
[gmx-users] Parameterizing N-terminal capping Raji
[gmx-users] Extract frames from Trajectory Harsha Ravishankar
[gmx-users] Extract frames from Trajectory Harsha Ravishankar
[gmx-users] Gromacs Neighbor List Output Adriaan Riet
[gmx-users] ionize flag Elias Santos
[gmx-users] gromacs.org_gmx-users Digest, Vol 175, Issue 91 Elias Santos
[gmx-users] start the simulation of the last stopping point. Edjan Silva
[gmx-users] gromacs.org_gmx-users Digest, Vol 175, Issue 28 - start the simulation of the last stopping point. Edjan Silva
[gmx-users] Best force Field for Protein Edjan Silva
[gmx-users] Recovery simulation error (Bratin Kumar Das) Edjan Silva
[gmx-users] PME and solvation free energy for individual ions Eric Smoll
[gmx-users] PME and solvation free energy for individual ions Eric Smoll
[gmx-users] CfP EuroVis 2019 Workshop on Molecular Graphics and Visual Analysis of Molecular Data Björn Sommer
[gmx-users] g++ compiling with gromacs library David van der Spoel
[gmx-users] g++ compiling with gromacs library David van der Spoel
[gmx-users] Spatially resolved diffusion coefficient Jacob Alan Spooner
[gmx-users] rdf coordination number over time (ns) Arun Srikanth
[gmx-users] rdf coordination number over time (ns) Arun Srikanth
[gmx-users] Regarding xpm2ps with a xpm file obtained from gmx densmap ABEL Stephane
[gmx-users] Regarding xpm2ps with a xpm file obtained from gmx densmap ABEL Stephane
[gmx-users] Regarding xpm2ps with a xpm file obtained from gmx densmap [update] and possible bug ABEL Stephane
[gmx-users] Regarding xpm2ps with a xpm file obtained from gmx densmap [update] and possible bug ABEL Stephane
[gmx-users] Regarding xpm2ps with a xpm file obtained from gmx densmap [update] and possible bug ABEL Stephane
[gmx-users] IMAC enable GPU problem Jiyong Su
[gmx-users] TOPOLOGY AND GRO FILE ATOMS NAME MISMATCH K. Subashini
[gmx-users] acpype is not working Farial Tavakoli
[gmx-users] DispErsion correction Farial Tavakoli
[gmx-users] DispErsion correction Farial Tavakoli
[gmx-users] LINCS warning Farial Tavakoli
[gmx-users] LINCS warning Farial Tavakoli
[gmx-users] atomtype OV not found Farial Tavakoli
[gmx-users] Lincs warning Farial Tavakoli
[gmx-users] gromacs.org_gmx-users Digest, Vol 175, Issue 40 Farial Tavakoli
[gmx-users] g++ compiling with gromacs library Alexander Tzanov
[gmx-users] g++ compiling with gromacs library Alexander Tzanov
[gmx-users] Turn on/off residues in gromacs Quyen Vu Van
[gmx-users] Turn on/off residues in gromacs Quyen Vu Van
[gmx-users] Question about nsttcouple Quyen Vu Van
[gmx-users] Question about nsttcouple Quyen Vu Van
[gmx-users] how to keep the ligand inside water box Quyen Vu Van
[gmx-users] how to keep the ligand inside water box Quyen Vu Van
[gmx-users] Nonbonded interaction between two molecules Quyen Vu Van
[gmx-users] Nonbonded interaction between two molecules Quyen Vu Van
[gmx-users] Average crystallographic angles for a triclinic box Lakshman Ji Verma
[gmx-users] Average crystallographic angles for a triclinic box Lakshman Ji Verma
[gmx-users] Average crystallographic angles for a triclinic box Lakshman Ji Verma
[gmx-users] Correct use of gmx traj -mol ? Dallas Warren
[gmx-users] Sphericity Dallas Warren
[gmx-users] DispErsion correction Dallas Warren
[gmx-users] pcoupl Berendsen Dallas Warren
[gmx-users] NVT LINCS Warning Dallas Warren
[gmx-users] OPLS AA/M error Dallas Warren
[gmx-users] System Charge in OPLS AA force field. Dallas Warren
[gmx-users] Gmx distance Dallas Warren
[gmx-users] Binding Free energy calculation Dallas Warren
[gmx-users] mismatch sol.gro/topol.gro Dallas Warren
[gmx-users] -selrpos option Dallas Warren
[gmx-users] non-zero total charge Dallas Warren
[gmx-users] CHARMM36 GROMACS implementation John Whittaker
[gmx-users] CHARMM36 GROMACS implementation John Whittaker
[gmx-users] gmx traj -ot output question Felix Y Yang
[gmx-users] binding energy or energy barrier kordzadeh at aut.ac.ir
[gmx-users] Second beta release of GROMACS 2019 Paul bauer
[gmx-users] GROMACS 2018.4 patch release available Paul bauer
[gmx-users] Third beta release of GROMACS 2019 Paul bauer
[gmx-users] Running Grompp in reverse and backing up MD data Paul bauer
[gmx-users] Building Gromacs paul buscemi
[gmx-users] dssp excutable-error marzieh dehghan
[gmx-users] free binding energy calculation marzieh dehghan
[gmx-users] gromacs.org_gmx-users Digest, Vol 175, Issue 84 marzieh dehghan
[gmx-users] gmx anadock mohammad fathabadi
[gmx-users] polymer state hosein geraili
[gmx-users] -t state.cpt hosein geraili
[gmx-users] temperature of a group hosein geraili
[gmx-users] thermostate hosein geraili
[gmx-users] g_mmpbsa spss4 at iacs.res.in
[gmx-users] parallelizing gromacs2018.4 praveen kumar
[gmx-users] parallelizing gromacs2018.4 praveen kumar
[gmx-users] Running Grompp in reverse and backing up MD data melichercik
[gmx-users] (no subject) maya nair
[gmx-users] generic hardware assembling for gromacs simulation pbuscemi at q.com
[gmx-users] Gmx distance rose rahmani
[gmx-users] Gmx distance rose rahmani
[gmx-users] Gmx distance rose rahmani
[gmx-users] Mpirun continuing mdrun rose rahmani
[gmx-users] Gmx distance rose rahmani
[gmx-users] Distance calculation rose rahmani
[gmx-users] Gmx distance rose rahmani
[gmx-users] Interaction energy rose rahmani
[gmx-users] Distance calculation rose rahmani
[gmx-users] Distance calculation rose rahmani
[gmx-users] Distance calculation rose rahmani
[gmx-users] Gmx sasa rose rahmani
[gmx-users] -selrpos option rose rahmani
[gmx-users] OPLS AA/M error Sla s
[gmx-users] OPLS AA/M error Sla s
[gmx-users] combining multiple MD proteins, daniel madulu shadrack
[gmx-users] HOW TO EXTEND A .XTC FILE ?? sky sky
[gmx-users] Fw: HOW TO EXTEND A .XTC FILE ?? sky sky
[gmx-users] HOW TO EXTEND A .XTC FILE ?? sky sky
[gmx-users] Question about nsttcouple minky son
[gmx-users] Question about nsttcouple minky son
[gmx-users] Expansion system after NVT Equilibrium in Gromacs yasminesophi at students.itb.ac.id
[gmx-users] gromacs.org_gmx-users Digest, Vol 174, Issue 87 tca1
[gmx-users] Crystal Simulation tca1
[gmx-users] Crystal Simulation tca1
[gmx-users] Bond Decomposition Error tca1
[gmx-users] vdW Settings for gmx insert-molecules tca1
[gmx-users] Insert Molecules Settings tca1
[gmx-users] NVT LINCS Warning zaved at tezu.ernet.in
[gmx-users] Regarding freezing of NP zaved at tezu.ernet.in
[gmx-users] ACPYPE not working. neelam wafa
[gmx-users] ACPYPE not working. neelam wafa
[gmx-users] ACPYPE not working. neelam wafa
[gmx-users] ACPYPE not working. neelam wafa
[gmx-users] ACPYPE not working. neelam wafa
[gmx-users] ACPYPE not working. neelam wafa
[gmx-users] ACPYPE not working. neelam wafa
[gmx-users] Ask for help 赵礼坤
[gmx-users] How to fix graphite layers? 高恺
[gmx-users] [CASS SPAM]Re: How to fix graphite layers? 高恺
[gmx-users] [CASS SPAM]Re: [CASS SPAM]Re: How to fix graphite layers? 高恺
[gmx-users] [CASS SPAM]Re: [CASS SPAM]Re: [CASS SPAM]Re: How to fix graphite layers? 高恺
[gmx-users] How to fix graphite layers? 高恺

Last message date: Fri Nov 30 23:07:09 CET 2018
Archived on: Fri Nov 30 23:07:11 CET 2018

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