[gmx-users] RMSF calculation

Hermann, Johannes J.Hermann at lrz.tu-muenchen.de
Fri Nov 30 15:17:59 CET 2018

Dear gmx-users,

rmsf calculates the fluctuation around a reference structure. Now, what 
is the reference structure? Is there a average structure calculated 
before? Or is the structure in the tpr file taken as reference 
structure? I would like to calculate it around a average structure as 
the starting structure in the tpr might be a little away from a physical 

Thanks in advance!

All the best


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