[gmx-users] Pulling doubt
rockinbhu at gmail.com
Mon Sep 3 08:44:40 CEST 2018
This pulling protocol of gromacs is still in doubt
Please tell me if there is dsDNA of chain A (12 bp)
and complimentary strand B(12 bp) like
chain A- 3' - 5'
chain B- 5' - 3'
If I pull 5' end of strand A and made 5' of B as a reference group
along the helical direction under constant velocity pulling. And both the
chains are free ( no restraint) ,
under this situation will the 5' of chain B (act as reference group) feel
the equal and opposite force like 5' end of chain A where pulling is
Due to this equal and opposite force both the strand will move opposite to
each other or not .
*With Best-Rakesh Kumar Mishra*
* (RA)CSD SINP Kolkata, India*
*E-mail - rakesh.mishra at saha.ac.in <rakesh.mishra at saha.ac.in> *
*Phone n. +91 9473662491, +918777496532*
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