[gmx-users] Regarding system shrunk

[Mijiddorj B]

Dear GMX users,

I study the interaction between polymer and surface interactions. Polymer
parameters were prepared by cgenff, and the parameters of the surface were
solved by INTERFACEFF. I performed short simulations, however, the system
was shrunk. I used the standard mdp file of charmm-gui membrane builder
excluding the smaller time steps and no-constraints.

If you have any experience, please advise me on how to solve this problem.

Best regards,

Mijiddorj