December 2019 Archives by thread

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Starting: Sun Dec 1 09:49:08 CET 2019
Ending: Tue Dec 31 17:55:09 CET 2019
Messages: 409

• [gmx-users] the a.u. unit in the RMS distribution graph   Lalehan Ozalp
  • [gmx-users] the a.u. unit in the RMS distribution graph   Justin Lemkul
    • [gmx-users] the a.u. unit in the RMS distribution graph   Lalehan Ozalp
• [gmx-users] Coulomb and vdW energies   Shreyas Kaptan
  • [gmx-users] Coulomb and vdW energies   Justin Lemkul
• [gmx-users] Charmm27 and Charmm36 atomtypes assignments for polymer   Mijiddorj B
  • [gmx-users] Charmm27 and Charmm36 atomtypes assignments for polymer   Justin Lemkul
• [gmx-users] solvent evaporation modeling   SAKO MIRZAIE
  • [gmx-users] solvent evaporation modeling   André Farias de Moura
    • [gmx-users] solvent evaporation modeling   SAKO MIRZAIE
  • [gmx-users] solvent evaporation modeling   David van der Spoel
• [gmx-users] Fwd: solvent evaporation modeling   SAKO MIRZAIE
• [gmx-users] toluene as a slovent   Iman Katouzian
  • [gmx-users] toluene as a slovent   Dallas Warren
• [gmx-users] npt.tpr protein-lig   Iman Katouzian
  • [gmx-users] npt.tpr protein-lig   Christian Blau
• [gmx-users] energy minimisation error   Ayesha Fatima
  • [gmx-users] energy minimisation error   Justin Lemkul
• [gmx-users] toluene as a slovent   Mijiddorj B
  • [gmx-users] toluene as a slovent   David van der Spoel
• [gmx-users] How to obtain the number of residue per turn with GROMACS ?   ABEL Stephane
• [gmx-users] solvent evaporation modeling   SAKO MIRZAIE
  • [gmx-users] solvent evaporation modeling   Kalil Bernardino
    • [gmx-users] solvent evaporation modeling   Anders Støttrup Larsen
      • [gmx-users] solvent evaporation modeling   SAKO MIRZAIE
• [gmx-users] Gromacs 2019.4 - cudaStreamSynchronize failed issue   Chenou Zhang
  • [gmx-users] Gromacs 2019.4 - cudaStreamSynchronize failed issue   Mark Abraham
    • [gmx-users] Gromacs 2019.4 - cudaStreamSynchronize failed issue   Chenou Zhang
    • [gmx-users] Gromacs 2019.4 - cudaStreamSynchronize failed issue   Chenou Zhang
    • [gmx-users] Gromacs 2019.4 - cudaStreamSynchronize failed issue   Chenou Zhang
      • [gmx-users] Gromacs 2019.4 - cudaStreamSynchronize failed issue   Szilárd Páll
      • [gmx-users] Gromacs 2019.4 - cudaStreamSynchronize failed issue   Chenou Zhang
      • [gmx-users] Gromacs 2019.4 - cudaStreamSynchronize failed issue   Szilárd Páll
• [gmx-users] Two atom oscillational period less than the time step   Mijiddorj B
  • [gmx-users] Two atom oscillational period less than the time step   Alessandra Villa
• [gmx-users] amide-capped C-terminus; OPLS force field   Sahil Lall
• [gmx-users] Disulphide bonded cyclic peptides   Alessandra Villa
  • [gmx-users] Disulphide bonded cyclic peptides   Sahil Lall
• [gmx-users] Martini on GROMACS   Shlomit Afgin
  • [gmx-users] Martini on GROMACS   Sahil Lall
• [gmx-users] Regarding LSI calculation   Omkar Singh
• [gmx-users] Pressure and restrains in NVT   Johannes Hermann
• [gmx-users] amide-capped C-terminus; OPLS force field   Nikhil Maroli
  • [gmx-users] amide-capped C-terminus; OPLS force field   Justin Lemkul
    • [gmx-users] amide-capped C-terminus; OPLS force field   Sahil Lall
      • [gmx-users] amide-capped C-terminus; OPLS force field   Justin Lemkul
• [gmx-users] Two atom oscillational period less than the time step   Nikhil Maroli
  • [gmx-users] Two atom oscillational period less than the time step   Justin Lemkul
• [gmx-users] energy minimisation error   Nikhil Maroli
• [gmx-users] npt.tpr protein-lig   Nikhil Maroli
• [gmx-users] Potential or total energy in dhdl files   Александр Лашков
  • [gmx-users] Potential or total energy in dhdl files   Alessandra Villa
    • [gmx-users] Potential or total energy in dhdl files   Александр Лашков
      • [gmx-users] Potential or total energy in dhdl files   Alessandra Villa
• [gmx-users] Third beta release of GROMACS 2020   Paul bauer
• [gmx-users] The total charge is not integer : -0.00465   SAKO MIRZAIE
  • [gmx-users] The total charge is not integer : -0.00465   Justin Lemkul
    • [gmx-users] The total charge is not integer : -0.00465   SAKO MIRZAIE
      • [gmx-users] The total charge is not integer : -0.00465   Mark Abraham
      • [gmx-users] The total charge is not integer : -0.00465   SAKO MIRZAIE
• [gmx-users] Lipidbook webpage is off - is it possible to find its content somewhere?   daniel depope
  • [gmx-users] Lipidbook webpage is off - is it possible to find its content somewhere?   Oliver Beckstein
    • [gmx-users] Lipidbook webpage is off - is it possible to find its content somewhere?   David van der Spoel
• [gmx-users] Error: Atoms in the .top are not numbered consecutively   변진영
  • [gmx-users] Error: Atoms in the .top are not numbered consecutively   Justin Lemkul
• [gmx-users] Fatal Error: cudaFuncGetAttributes failed   Mayank Vats
• [gmx-users] gmx clustsize   anand sharma
  • [gmx-users] gmx clustsize   Bratin Kumar Das
• [gmx-users] Overriding atom type.   Yogesh Sharma
  • [gmx-users] Overriding atom type.   Alessandra Villa
• [gmx-users] Charmm27 and Charmm36 atomtypes assignments for polymer   Mijiddorj B
• [gmx-users] Problem with GROMAC 2019.4   Avi Hundal
  • [gmx-users] Problem with GROMAC 2019.4   Christian Blau
    • [gmx-users] Problem with GROMAC 2019.4   Avi Hundal
    • [gmx-users] Problem with GROMAC 2019.4   Paul Buscemi
      • [gmx-users] Problem with GROMAC 2019.4   Avi Hundal
      • [gmx-users] Problem with GROMAC 2019.4   Paul Buscemi
      • [gmx-users] Problem with GROMAC 2019.4   Avi Hundal
      • [gmx-users] Problem with GROMAC 2019.4   Paul Buscemi
• [gmx-users] Overriding atom type.   Yogesh Sharma
  • [gmx-users] Overriding atom type.   Justin Lemkul
• [gmx-users] Maximising Hardware Performance on Local node: Optimal settings   Matthew Fisher
  • [gmx-users] Maximising Hardware Performance on Local node: Optimal settings   Kutzner, Carsten
  • [gmx-users] Maximising Hardware Performance on Local node: Optimal settings   Christian Blau
    • [gmx-users] Maximising Hardware Performance on Local node: Optimal settings   Kevin Boyd
• [gmx-users] Problem restarting job 2016.4 with gromacs 2019-4   CROUZY Serge 119222
  • [gmx-users] Problem restarting job 2016.4 with gromacs 2019-4   Justin Lemkul
    • [gmx-users] Problem restarting job 2016.4 with gromacs 2019-4   Mark Abraham
• [gmx-users] Overriding atom type.   Yogesh Sharma
  • [gmx-users] Overriding atom type.   Justin Lemkul
• [gmx-users] Question about implicit solvent and REMD   Mohammad Madani
• [gmx-users] Generalized Born solvation   Ling Chan
  • [gmx-users] Generalized Born solvation   David van der Spoel
• [gmx-users] How to calculate the spatial distribution function for the last 50ns of the trajectory?   Peiyin Lee
  • [gmx-users] How to calculate the spatial distribution function for the last 50ns of the trajectory?   Christian Blau
    • [gmx-users] How to calculate the spatial distribution function for the last 50ns of the trajectory?   Peiyin Lee
• [gmx-users] Help installing do_x3dna   Christian Blau
• [gmx-users] run MD in vacuum   HERNANDEZ ALBA Oscar (ECPM)
  • [gmx-users] run MD in vacuum   Justin Lemkul
    • [gmx-users] run MD in vacuum   dgfd dgdfg
• [gmx-users] Check the 1-4 interactions, and the non-bonded pairs in the output   Suvardhan Jonnalagadda
  • [gmx-users] Check the 1-4 interactions, and the non-bonded pairs in the output   Alessandra Villa
• [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Glenn (Gedaliah) Wolosh
  • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Mark Abraham
    • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Glenn (Gedaliah) Wolosh
      • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Justin Lemkul
      • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Glenn (Gedaliah) Wolosh
      • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Mark Abraham
      • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Glenn (Gedaliah) Wolosh
      • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Mark Abraham
      • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Glenn (Gedaliah) Wolosh
      • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Mark Abraham
      • [gmx-users] Seg Fault with Gromacs gmx grompp command - Intel compiler   Glenn (Gedaliah) Wolosh
• [gmx-users] Center of mass motion removal   Alex
  • [gmx-users] Center of mass motion removal   Alessandra Villa
  • [gmx-users] Center of mass motion removal   Justin Lemkul
    • [gmx-users] Center of mass motion removal   Alex
      • [gmx-users] Center of mass motion removal   Justin Lemkul
      • [gmx-users] Center of mass motion removal   Alex
      • [gmx-users] Center of mass motion removal   Dallas Warren
      • [gmx-users] Center of mass motion removal   Alex
      • [gmx-users] Center of mass motion removal   Albert
      • [gmx-users] Center of mass motion removal   Justin Lemkul
      • [gmx-users] Center of mass motion removal   Alex
      • [gmx-users] Center of mass motion removal   Justin Lemkul
• [gmx-users] How to calculate potential energy with dynamics selection index?   Peiyin Lee
  • [gmx-users] How to calculate potential energy with dynamics selection index?   Alessandra Villa
    • [gmx-users] How to calculate potential energy with dynamics selection index?   Peiyin Lee
      • [gmx-users] How to calculate potential energy with dynamics selection index?   Justin Lemkul
• [gmx-users] Chemical Shifts prediction using gmx chi -shift   Florent
  • [gmx-users] Chemical Shifts prediction using gmx chi -shift   Christian Blau
• [gmx-users] CA ions   Iman Katouzian
  • [gmx-users] CA ions   Tasneem Kausar
    • [gmx-users] CA ions   Paul Buscemi
      • [gmx-users] CA ions   Justin Lemkul
• [gmx-users] How to deal with the negative reference distance while doing Umbrella Sampling using Gromcas?   Chenlin Lu
  • [gmx-users] How to deal with the negative reference distance while doing Umbrella Sampling using Gromcas?   Justin Lemkul
• [gmx-users] Chemical reaction   Sina Omrani
  • [gmx-users] Chemical reaction   Justin Lemkul
• [gmx-users] configure gmx with external mpi library - an error   Gil Vernik
  • [gmx-users] configure gmx with external mpi library - an error   Justin Lemkul
    • [gmx-users] configure gmx with external mpi library - an error   Mark Abraham
      • [gmx-users] configure gmx with external mpi library - an error   Gil Vernik
• [gmx-users] making movie with VMD   mmousivand93
  • [gmx-users] making movie with VMD   Dallas Warren
• [gmx-users] (no subject)   shakuntala dhurua
  • [gmx-users] (no subject)   Tasneem Kausar
    • [gmx-users] (no subject)   shakuntala dhurua
      • [gmx-users] (no subject)   Tasneem Kausar
      • [gmx-users] (no subject)   shakuntala dhurua
• [gmx-users] Queries related to parameterization   Smruti Sanjita Mishra
  • [gmx-users] Queries related to parameterization   Justin Lemkul
• [gmx-users] GROMACS for replica exchange - recommendation for the research papers   Gil Vernik
• [gmx-users] Performance GROMACS on GPU   Talarico Carmine
• [gmx-users] Chemical Shifts prediction using gmx chi -shift   Florent Langenfeld
• [gmx-users] calculation of tilt angle of helix against the bilayer normal   SHAHEE ISLAM
• [gmx-users] Regarding system shrunk   Mijiddorj B
  • [gmx-users] Regarding system shrunk   Paul Buscemi
• [gmx-users] A Gromacs Port of the amber LIPID17 force field   Zhiyi Wu
• [gmx-users] topology can't be generated by pdb2gmx with drude force field embedded   严攀
• [gmx-users] topology can't be generated by pdb2gmx with drude force field embedded   严攀
  • [gmx-users] topology can't be generated by pdb2gmx with drude force field embedded   Justin Lemkul
  • [gmx-users] 回复：topology can't be generated by pdb2gmx with drude force field embedded   严攀
    • [gmx-users] 回复：topology can't be generated by pdb2gmx with drude force field embedded   Justin Lemkul
• [gmx-users] Intermolecular interactions in RDF   Apramita Chand
  • [gmx-users] Intermolecular interactions in RDF   Justin Lemkul
• [gmx-users] Error: Atoms in the .top are not numbered consecutively   변진영
  • [gmx-users] Error: Atoms in the .top are not numbered consecutively   Justin Lemkul
    • [gmx-users] Error: Atoms in the .top are not numbered consecutively   변진영
• [gmx-users] Gromacs 2018.8 checksum   András Ferenc WACHA
• [gmx-users] Neutral arginine; Charmm   Sahil Lall
  • [gmx-users] Neutral arginine; Charmm   Justin Lemkul
• [gmx-users] How to set restraints for protein-ligand complex in free energy calculation?   Sadaf Rani
• [gmx-users] How to set restraints for Protein-ligand complex in free energy calculation?   Sadaf Rani
  • [gmx-users] How to set restraints for Protein-ligand complex in free energy calculation?   Bratin Kumar Das
    • [gmx-users] How to set restraints for Protein-ligand complex in free energy calculation?   Justin Lemkul
• [gmx-users] Question: How to delete water   변진영
  • [gmx-users] Question: How to delete water   Justin Lemkul
    • [gmx-users] Question: How to delete water   John Whittaker
      • [gmx-users] Question: How to delete water   Justin Lemkul
• [gmx-users] Add new window for MBAR calculation   Александр Лашков
  • [gmx-users] Add new window for MBAR calculation   Alessandra Villa
    • [gmx-users] Add new window for MBAR calculation   Александр Лашков
• [gmx-users] Conference Announcement: Molecular Modeling Workshop, Feb 17-19, 2020 in Erlangen, Germany   Harald Lanig
• [gmx-users] Trajectory guided by density maps   Ramon Guixà
  • [gmx-users] Trajectory guided by density maps   Christian Blau
    • [gmx-users] Trajectory guided by density maps   Ramon Guixà
      • [gmx-users] Trajectory guided by density maps   Christian Blau
      • [gmx-users] Trajectory guided by density maps   Ramon Guixà
      • [gmx-users] Trajectory guided by density maps   Christian Blau
      • [gmx-users] Trajectory guided by density maps   Ramon Guixà
• [gmx-users] Rigid water constraint forces in trajectory output   Jacob Monroe
  • [gmx-users] Rigid water constraint forces in trajectory output   Mark Abraham
• [gmx-users] What is the use of -nice option in gmx mdrun?   atb files
  • [gmx-users] What is the use of -nice option in gmx mdrun?   Justin Lemkul
• [gmx-users] Signal: Floating point exception (8) Signal code: Floating point divide-by-zero (3)   Dave M
  • [gmx-users] Signal: Floating point exception (8) Signal code: Floating point divide-by-zero (3)   Mark Abraham
    • [gmx-users] Signal: Floating point exception (8) Signal code: Floating point divide-by-zero (3)   Dave M
      • [gmx-users] Signal: Floating point exception (8) Signal code: Floating point divide-by-zero (3)   Paul bauer
      • [gmx-users] Signal: Floating point exception (8) Signal code: Floating point divide-by-zero (3)   Dave M
• [gmx-users] gmx spatial error   Apramita Chand
  • [gmx-users] gmx spatial error   Dallas Warren
• [gmx-users] gromacs.org_gmx-users-owner at maillist.sys.kth.se   Sadaf Rani
• [gmx-users] Gromacs 2019.4 compliantion with GPU support   bonjour899
  • [gmx-users] Gromacs 2019.4 compliantion with GPU support   Mark Abraham
• [gmx-users] question regarding gmx helix orientation   SHAHEE ISLAM
  • [gmx-users] question regarding gmx helix orientation   Alessandra Villa
• [gmx-users] GPU performance, regarding   RAHUL SURESH
  • [gmx-users] GPU performance, regarding   John Whittaker
    • [gmx-users] GPU performance, regarding   RAHUL SURESH
      • [gmx-users] GPU performance, regarding   Mateusz Bieniek
      • [gmx-users] GPU performance, regarding   Mark Abraham
      • [gmx-users] GPU performance, regarding   RAHUL SURESH
    • [gmx-users] GPU performance, regarding   Paul Buscemi
      • [gmx-users] GPU performance, regarding   Mark Abraham
• [gmx-users] setting distance restraints between atoms belonging to different residues   Sadaf Rani
  • [gmx-users] setting distance restraints between atoms belonging to different residues   Alessandra Villa
• [gmx-users] How to properly use tune_pme?   Marcin Mielniczuk
• [gmx-users] How to assign PME ranks to particular nodes?   Marcin Mielniczuk
  • [gmx-users] How to assign PME ranks to particular nodes?   Mark Abraham
    • [gmx-users] How to assign PME ranks to particular nodes?   Marcin Mielniczuk
• [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Pragati Sharma
  • [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Paul bauer
    • [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Dave M
      • [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Pragati Sharma
      • [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Mark Abraham
• [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Nikhil Maroli
  • [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Pragati Sharma
• [gmx-users] Error: Atomtype CH2 not found   Muthusankar
  • [gmx-users] Error: Atomtype CH2 not found   Justin Lemkul
    • [gmx-users] Error: Atomtype CH2 not found   Paul Buscemi
      • [gmx-users] Error: Atomtype CH2 not found   Justin Lemkul
      • [gmx-users] Error: Atomtype CH2 not found   paul buscemi
      • [gmx-users] Error: Atomtype CH2 not found   Justin Lemkul
• [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Nikhil Maroli
  • [gmx-users] Groms 2019.0, simulations using 2 GPUs: RTX 2080Ti   Mark Abraham
• [gmx-users] convert charmm .str file into .itp file?   Muthusankar
  • [gmx-users] convert charmm .str file into .itp file?   Justin Lemkul
• [gmx-users] setting distance restraints between atoms belonging to different residues (Alessandra Villa)   Sadaf Rani
  • [gmx-users] setting distance restraints between atoms belonging to different residues (Alessandra Villa)   Alessandra Villa
• [gmx-users] question regarding gmx helix orientation   SHAHEE ISLAM
  • [gmx-users] question regarding gmx helix orientation   Justin Lemkul
• [gmx-users] problem of MD simulation   Albert
  • [gmx-users] problem of MD simulation   Mark Abraham
• [gmx-users] LINCS constraint on DU-DU bond   Luirink, R.A.
  • [gmx-users] LINCS constraint on DU-DU bond   Alessandra Villa
• [gmx-users] LINCS constraint on DU-DU bond   Luirink, R.A.
  • [gmx-users] LINCS constraint on DU-DU bond   Justin Lemkul
    • [gmx-users] LINCS constraint on DU-DU bond   Luirink, R.A.
• [gmx-users] setting distance restraints between atoms belonging to different residues (Alessandra Villa)   Sadaf Rani
  • [gmx-users] setting distance restraints between atoms belonging to different residues (Alessandra Villa)   Justin Lemkul
• [gmx-users] Vacuum minimization of massive Protein:RNA complex.   Miner, Jacob Carlson
• [gmx-users] Selecting multiple dihedral angles with common atoms   Pathum Manjula Weerawarna
  • [gmx-users] Selecting multiple dihedral angles with common atoms   Alessandra Villa
• [gmx-users] acidic pH simulation   Iman Katouzian
  • [gmx-users] acidic pH simulation   Justin Lemkul
• [gmx-users] rotacf error   Mario Andres Rodriguez Pineda
  • [gmx-users] rotacf error   David van der Spoel
    • [gmx-users] rotacf error   Mario Andres Rodriguez Pineda
• [gmx-users] Young's modulus   Iman Katouzian
  • [gmx-users] Young's modulus   David van der Spoel
    • [gmx-users] Young's modulus   Paul Buscemi
• [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Quin K
  • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Quin K
    • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Justin Lemkul
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Quin K
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Justin Lemkul
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Quin K
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Justin Lemkul
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Quin K
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Justin Lemkul
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Quin K
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Justin Lemkul
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Quin K
      • [gmx-users] [gmx-user] RMSD analysis of protein-ligand complex   Justin Lemkul
• [gmx-users] Atom O in residue was not found in rtp entry   Sadaf Rani
  • [gmx-users] Atom O in residue was not found in rtp entry   Justin Lemkul
• [gmx-users] do_dssp   Iman Katouzian
  • [gmx-users] do_dssp   Justin Lemkul
• [gmx-users] Small molecule with transition metal (Fe)   Venoos Amiri Roodan
  • [gmx-users] Small molecule with transition metal (Fe)   Alessandra Villa
• [gmx-users] Generating mdout.mdp   Dorj Bat
  • [gmx-users] Generating mdout.mdp   Justin Lemkul
• [gmx-users] Enforced Rotation   Harutyun Sahakyan
• [gmx-users] Pre-equilibrating the solvent before solvating the solute   D. Yousefi
  • [gmx-users] Pre-equilibrating the solvent before solvating the solute   Justin Lemkul
• [gmx-users] writing trajectory of an atom   Hadi Rahmaninejad
  • [gmx-users] writing trajectory of an atom   Salman Zarrini
    • [gmx-users] writing trajectory of an atom   Hadi Rahmaninejad
      • [gmx-users] writing trajectory of an atom   Salman Zarrini
      • [gmx-users] writing trajectory of an atom   Dallas Warren
• [gmx-users] Constant pH replica exchange MD in Gromacs   Muneeswaran S
• [gmx-users] Constant pH replica exchange MD in Gromacs (Muneeswaran S)   Groenhof, Gerrit
  • [gmx-users] Constant pH replica exchange MD in Gromacs (Muneeswaran S)   Muneeswaran S
• [gmx-users] Can't engage OpenCL (No rule to make target /usr/lib/libOpenCL.so)   SkyTo
  • [gmx-users] Can't engage OpenCL (No rule to make target /usr/lib/libOpenCL.so)   Mark Abraham
    • [gmx-users] [solved] Can't engage OpenCL (No rule to make target /usr/lib/libOpenCL.so)   SkyTo
• [gmx-users] WHAM 3D   Quyen V. Vu
• [gmx-users] (no subject)   Emran Heshmati
• [gmx-users] gmx distance   Emran Heshmati
  • [gmx-users] gmx distance   Sahil Lall
• [gmx-users] Force (%)" value in md.log file   Pragati Sharma
  • [gmx-users] Force (%)" value in md.log file   David van der Spoel
• [gmx-users] constraints   Maria Luisa
  • [gmx-users] constraints   Alessandra Villa
• [gmx-users] Extract LJ-14 energy   Suvardhan Jonnalagadda
  • [gmx-users] Extract LJ-14 energy   Bratin Kumar Das
    • [gmx-users] Extract LJ-14 energy   Suvardhan Jonnalagadda
      • [gmx-users] Extract LJ-14 energy   Justin Lemkul
  • [gmx-users] Extract LJ-14 energy   Mark Abraham
    • [gmx-users] Extract LJ-14 energy   Suvardhan Jonnalagadda
• [gmx-users] Gromacs compilation problem   Tuanan Lourenço
  • [gmx-users] Gromacs compilation problem   Mark Abraham
• [gmx-users] my mail id   Devargya Chakraborty
• [gmx-users] Fwd: setting ionic liquid simulation in gromacs   Devargya Chakraborty
  • [gmx-users] Fwd: setting ionic liquid simulation in gromacs   Bratin Kumar Das
• [gmx-users] segmantation fault   Bratin Kumar Das
  • [gmx-users] segmantation fault   Alessandra Villa
• [gmx-users] CO2 virtual site   Sina Omrani
  • [gmx-users] CO2 virtual site   Mark Abraham
• [gmx-users] restraints   Sadaf Rani
• [gmx-users] definition of the prefactors in the wall potentials   LOISON CLAIRE
• [gmx-users] GROMACS 2020 release candidate   Paul bauer
  • [gmx-users] GROMACS 2020 release candidate   Tafelmeier, Stefanie
    • [gmx-users] GROMACS 2020 release candidate   Paul bauer
• [gmx-users] Equilibrium state   elham
  • [gmx-users] Equilibrium state   Justin Lemkul
    • [gmx-users] Equilibrium state   Justin Lemkul
      • [gmx-users] Equilibrium state   Александр Лашков
• [gmx-users] GROMACS 2019.5 patch release available   Paul bauer
• [gmx-users] Sampling a weak ligand   Raphaël Robidas
  • [gmx-users] Sampling a weak ligand   Александр Лашков
    • [gmx-users] Sampling a weak ligand   Александр Лашков
      • [gmx-users] Sampling a weak ligand   Raphaël Robidas
      • [gmx-users] Sampling a weak ligand   Александр Лашков
• [gmx-users] [gmx-user] MD simulation of protein-ligand complex   Quin K
  • [gmx-users] [gmx-user] MD simulation of protein-ligand complex   Justin Lemkul
    • [gmx-users] [gmx-user] MD simulation of protein-ligand complex   Quin K
      • [gmx-users] [gmx-user] MD simulation of protein-ligand complex   Justin Lemkul
• [gmx-users] binding energy   Negar Parvizi
  • [gmx-users] binding energy   Souparno Adhikary
    • [gmx-users] binding energy   Bratin Kumar Das
      • [gmx-users] binding energy   Justin Lemkul
• [gmx-users] Electrostatic calculation method for lie   Александр Лашков
• [gmx-users] How to calculate binding free energy of the charged ligand and protein   Shradheya R.R. Gupta
  • [gmx-users] How to calculate binding free energy of the charged ligand and protein   Александр Лашков
• [gmx-users] (no subject)   nupur munjal
  • [gmx-users] (no subject)   Najamuddin Memon
    • [gmx-users] (no subject)   Justin Lemkul
• [gmx-users] No.of ethanol molecules passing   Ali Ahmad (阿力)
  • [gmx-users] No.of ethanol molecules passing   Александр Лашков
    • [gmx-users] No.of ethanol molecules passing   Ali Ahmad (阿力)
      • [gmx-users] No.of ethanol molecules passing   Александр Лашков
  • [gmx-users] No.of ethanol molecules passing   Justin Lemkul
• [gmx-users] trajectory error   spss4 at iacs.res.in
• [gmx-users] Distance Calculation peptide-membrane   Subhomoi Borkotoky
  • [gmx-users] Distance Calculation peptide-membrane   Justin Lemkul
    • [gmx-users] Distance Calculation peptide-membrane   Subhomoi Borkotoky
      • [gmx-users] Distance Calculation peptide-membrane   Justin Lemkul
• [gmx-users] Regarding energy group exclusion   Nashit Jalal 17250017
  • [gmx-users] Regarding energy group exclusion   Justin Lemkul
• [gmx-users] RMSD of a single water molecule.   Seketoulie Keretsu
• [gmx-users] trajectory error   spss4 at iacs.res.in
  • [gmx-users] trajectory error   Justin Lemkul
• [gmx-users] Question about the SASA value per residue   Pandya, Akash
  • [gmx-users] Question about the SASA value per residue   Justin Lemkul
• [gmx-users] conveniently placing restraints on a subset of a molecule   Miro Astore
  • [gmx-users] conveniently placing restraints on a subset of a molecule   Justin Lemkul
• [gmx-users] [gmx-user] 300K vs 310K for molecular dynamic simulation   Quin K
  • [gmx-users] [gmx-user] 300K vs 310K for molecular dynamic simulation   Myunggi Yi
  • [gmx-users] [gmx-user] 300K vs 310K for molecular dynamic simulation   Justin Lemkul
• [gmx-users] Gromax don't recognize -ignh command   ali khamoushi
  • [gmx-users] Gromax don't recognize -ignh command   Mark Abraham
    • [gmx-users] Gromax don't recognize -ignh command   Justin Lemkul
• [gmx-users] largest charge group   Maryam Sadeghi
  • [gmx-users] largest charge group   Justin Lemkul
    • [gmx-users] largest charge group   Maryam Sadeghi
      • [gmx-users] largest charge group   Justin Lemkul
• [gmx-users] atom moved too far   Christos Deligkaris
  • [gmx-users] atom moved too far   Justin Lemkul
• [gmx-users] How to rotate the molecule in box   sunyeping
• [gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers   Rajib Biswas
  • [gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers   Quin K
• [gmx-users] [gmx-user] Autodock Vina Out use in gromacs MD   Quin K
  • [gmx-users] [gmx-user] Autodock Vina Out use in gromacs MD   Quin K
    • [gmx-users] [gmx-user] Autodock Vina Out use in gromacs MD   Justin Lemkul
  • [gmx-users] [gmx-user] Autodock Vina Out use in gromacs MD   Justin Lemkul
• [gmx-users] What is the "gen-vel" used for?   sunyeping
  • [gmx-users] What is the "gen-vel" used for?   Justin Lemkul
    • [gmx-users] What is the "gen-vel" used for?   sunyeping
      • [gmx-users] What is the "gen-vel" used for?   Justin Lemkul
• [gmx-users] g_membed mdp file   Yogesh Sharma
  • [gmx-users] g_membed mdp file   Hamid Zaree
• [gmx-users] g_membed mdp file   Yogesh Sharma
  • [gmx-users] g_membed mdp file   Hamid Zaree
• [gmx-users] [gmx-user] coordinates mismatch error   Quin K
  • [gmx-users] [gmx-user] coordinates mismatch error   Quin K
    • [gmx-users] [gmx-user] coordinates mismatch error   Justin Lemkul
      • [gmx-users] [gmx-user] coordinates mismatch error   Quin K

Last message date: Tue Dec 31 17:55:09 CET 2019
Archived on: Tue Dec 31 17:55:10 CET 2019

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