[gmx-users] Force (%)" value in md.log file
Pragati Sharma
pragati2325 at gmail.com
Thu Dec 19 12:21:50 CET 2019
Hello all,
I am simulating a polymer system (30000 atoms, 2fs time step, PME) on a
workstation with CPU: 2X6 cores (24 logical) and 2 2080 RTX GPUs.
I am running the 2 separate simulations using 10 threads and 1 GPU each
using command:
*gmx_tmpi mdrun -v -deffnm md2 -nb gpu -gpu_id 1 -nt 10*
I found that the force values (%) are very high in md.log file. *Is this
unusual ? If yes, how to decrease this value?*
*Excerpts from md.log file*
"On 1 MPI rank, each using 10 OpenMP threads
Computing: Num Num Call Wall time
Giga-Cycles
Ranks Threads Count (s)
total sum %
-----------------------------------------------------------------------------
Neighbor search 1 10 1001 4.724
160.233 3.4
Launch GPU ops. 1 10 200002 10.971 372.134
7.9
* Force 1 10 100001 80.756
2739.287 57.9*
Wait PME GPU gather 1 10 100001 0.472 16.007
0.3
Reduce GPU PME F 1 10 100001 2.185 74.127
1.6
Wait GPU NB local 1 10 100001 0.591 20.042
0.4
NB X/F buffer ops. 1 10 199001 12.043 408.514
8.6
Write traj. 1 10 11 0.337
11.429 0.2
Update 1 10 100001 4.054
137.520 2.9
Constraints 1 10 100003 19.981
677.776 14.3
Rest 3.326
112.803 2.4
-----------------------------------------------------------------------------
Total 139.440 4729.873
100.0 "
I am comparing with a published benchmark having values for "*Force=
14.9%".*
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