[gmx-users] How to calculate distance using gromacs?

[Qinghua Liao]

Hello,

You can do it with gmx mindist, but first you need to make two index 
group of the two residues.


All the best,
Qinghua

On 2/15/19 2:16 PM, Edjan Silva wrote:
> Dear,
>
> I performed a 100 ns simulation with B-DNA.
> I want to know which gromacs option I can calculate the distance between
> two DNA residues (guanine 5 and ADENIN 6, for example) during the 100 ns of
> simulation.