February 2019 Archives by author

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Starting: Fri Feb 1 03:30:00 CET 2019
Ending: Thu Feb 28 20:44:11 CET 2019
Messages: 391

[gmx-users] slow gmx Mark Abraham
[gmx-users] Total time of ligand in active site Mark Abraham
[gmx-users] PBC conditions for Vacuum simulation Mark Abraham
[gmx-users] Simulated Annealing Mark Abraham
[gmx-users] Fatal Lambda error Mark Abraham
[gmx-users] How to use "echo" to output index file with only one command line? Mark Abraham
[gmx-users] Units for electrical-field-x parameters Mark Abraham
[gmx-users] Units for electrical-field-x parameters Mark Abraham
[gmx-users] domain decomposition error >60 ns into simulation on a specific machine Mark Abraham
[gmx-users] Interaction energies between atoms Mark Abraham
[gmx-users] Unability to generate toplogy files for T3 & T4 residues from 4lnx.pdb Mark Abraham
[gmx-users] Error detecting AMD GPU in GROMACS 2019.1 Mark Abraham
[gmx-users] Pull code errors Mark Abraham
[gmx-users] Pull code errors Mark Abraham
[gmx-users] Simple way to get last structure from trajectory. Mark Abraham
[gmx-users] Simple way to get last structure from trajectory. Mark Abraham
[gmx-users] can dynamic selection be used with gmx rdf? Mark Abraham
[gmx-users] Residue numbering in Gromacs and VMD Mark Abraham
[gmx-users] Can I align individual domains (not the whole structure) in the RMSD? Mark Abraham
[gmx-users] Can I align individual domains (not the whole structure) in the RMSD? Mark Abraham
[gmx-users] slow gmx Albert
[gmx-users] dt Alex
[gmx-users] Density profile in cylindrical coordinates Alex
[gmx-users] Maximum number density in gmx densmap Alex
[gmx-users] Fwd: Maximum number density in gmx densmap Alex
[gmx-users] Fwd: Maximum number density in gmx densmap Alex
[gmx-users] Pull code Alex
[gmx-users] continuing a pulling simulation - append misses the pull_pullx.xvg and pull_pullf.xvg Alex
[gmx-users] Odd results from rerun for solvent water Mecklenfeld Andreas
[gmx-users] Gromacs Group Project Force-Field Query Matthew Atkinson
[gmx-users] g_msd Time Unit Fotis Baltoumas
[gmx-users] Bond breakage modelling Paul Bauer
[gmx-users] Phosphorylated serine and threonine residues (Gromacs MD) Swapnil Bhujbal
[gmx-users] Fwd: Phosphorylated serine and threonine residues (Gromacs MD) Swapnil Bhujbal
[gmx-users] Ionic conductivity Jianna Blocchi
[gmx-users] Ionic conductivity Jianna Blocchi
[gmx-users] atoms-atoms distance Jianna Blocchi
[gmx-users] non-bond (Coulomb, van der Waals) interactions scaled down to 40% of their original value Jianna Blocchi
[gmx-users] The first coordination shell Jianna Blocchi
[gmx-users] Isothermal compressibility of PEO Jianna Blocchi
[gmx-users] Fw: Isothermal compressibility of PEO Jianna Blocchi
[gmx-users] Equilibration step not moving forward Kevin Boyd
[gmx-users] offloading PME to GPUs Kevin Boyd
[gmx-users] Simulation crashed - Large VCM, Pressure scaling more than 1%, Bond length not finite Kevin Boyd
[gmx-users] Simulation crashed - Large VCM, Pressure scaling more than 1%, Bond length not finite Kevin Boyd
[gmx-users] Validating gromacs protein simulations against experimental NOEs? Denny Bromley
[gmx-users] Simulation crashed - Large VCM, Pressure scaling more than 1%, Bond length not finite zeineb SI CHAIB
[gmx-users] Simulation crashed - Large VCM, Pressure scaling more than 1%, Bond length not finite zeineb SI CHAIB
[gmx-users] can dynamic selection be used with gmx rdf? Cardenas, Alfredo E
[gmx-users] can dynamic selection be used with gmx rdf? Cardenas, Alfredo E
[gmx-users] thread mpi Vincenzo Carravetta
[gmx-users] thread mpi Vincenzo Carravetta
[gmx-users] error while running gmx grompp Elton Carvalho
[gmx-users] Select one molecule closest to another molecule for all snapshots Apramita Chand
[gmx-users] martini: what is the column position if "ASP" is changed to "ASP0" in the itp file? ZHANG Cheng
[gmx-users] martini: what is the column position if "ASP" is changed to "ASP0" in the itp file? ZHANG Cheng
[gmx-users] martini: clarification on the Particle definitions (i.e. force field) ZHANG Cheng
[gmx-users] martini: How do I know if the coarse-grained (CG) ions are added? ZHANG Cheng
[gmx-users] More details on the "Steepest Descents" ZHANG Cheng
[gmx-users] How to use "echo" to output index file with only one command line? ZHANG Cheng
[gmx-users] How to use "echo" to output index file with only one command line? ZHANG Cheng
[gmx-users] syntax for index file in "gmx distance" ZHANG Cheng
[gmx-users] syntax for index file in "gmx distance" ZHANG Cheng
[gmx-users] Is there a more efficient way to calculate the "gmx distance" with a very long index? ZHANG Cheng
[gmx-users] Is there a more efficient way to calculate the "gmx distance" with a very long index? ZHANG Cheng
[gmx-users] Can I align individual domains (not the whole structure) in the RMSD? ZHANG Cheng
[gmx-users] Can I align individual domains (not the whole structure) in the RMSD? ZHANG Cheng
[gmx-users] help for debye waller factor calcuations Zhang Chi
[gmx-users] g_msd Time Unit Timothy Cholko
[gmx-users] g_msd Time Unit Timothy Cholko
[gmx-users] Error while running grompp command Bratin Kumar Das
[gmx-users] mindist Sam David
[gmx-users] Obtaining opls forcefield Sam David
[gmx-users] Interaction energies between atoms Sam David
[gmx-users] Equilibration step not moving forward Deepanshi
[gmx-users] How to use "echo" to output index file with only one command line? Pedro Deira
[gmx-users] How to use "echo" to output index file with only one command line? Pedro Deira
[gmx-users] gmx trjconv -center not working? Rajat Desikan
[gmx-users] gmx trjconv -center not working? Rajat Desikan
[gmx-users] Pulling ion across the bilayer-choosing pull_coord1_geometry Javad Deylami
[gmx-users] Radius of gyration and moment of inertia (Dallas Warren) Aishwarya Dhar
[gmx-users] gromacs.org_gmx-users Digest, Vol 177, Issue 90 Aishwarya Dhar
[gmx-users] Trouble getting gmx gyrate to work (Windows/Ubuntu) Ben Drewry
[gmx-users] Trouble getting gmx gyrate to work (Windows/Ubuntu) Ben Drewry
[gmx-users] PBC conditions for Vacuum simulation Neena Susan Eappen
[gmx-users] Fwd: Maximum number density in gmx densmap Mostafa Fakhraee
[gmx-users] Hydrogen bond in z direction Mostafa Fakhraee
[gmx-users] Problem about Cgenff lone pairs Shujie Fan
[gmx-users] Problem about Cgenff lone pairs Shujie Fan
[gmx-users] CMAP TORSION ERROR Saman Fatihi
[gmx-users] Pull code errors Ayesha Fatima
[gmx-users] Ionic conductivity Behnam Ghalami
[gmx-users] Automatic calculation of several RDFs Behnam Ghalami
[gmx-users] WHAM bootstrapping independence of windows Eugenio Gil
[gmx-users] random initial failure Harry Mark Greenblatt
[gmx-users] random initial failure Harry Mark Greenblatt
[gmx-users] Problem with extending simulation with checkpoint files after running from parent directory Cian Hamilton
[gmx-users] computing group virial Gyorgy Hantal
[gmx-users] gmx trjconv -center not working? Gyorgy Hantal
[gmx-users] CHARMM or AMBETR forcefield for methylated glutamine and glutamic acid. Gyorgy Hantal
[gmx-users] calculation of surface tension of a polymer surface_2 Gyorgy Hantal
[gmx-users] AWH with two bias potentials Berk Hess
[gmx-users] AWH with two bias potentials Berk Hess
[gmx-users] AWH with two bias potentials Berk Hess
[gmx-users] AWH with two bias potentials Berk Hess
[gmx-users] AWH with two bias potentials Berk Hess
[gmx-users] AWH with two bias potentials Berk Hess
[gmx-users] Pull code errors Berk Hess
[gmx-users] Hydrogen bond calculation ISHRAT JAHAN
[gmx-users] Restraints not working during minimization James
[gmx-users] Do hydrogen bonds innately exist using mdrun? James
[gmx-users] gromacs.org_gmx-users Digest, Vol 178, Issue 37 James
[gmx-users] Water permeation through a channel of membrane protein (Naba) Joel Janke
[gmx-users] Simulated Annealing Shan Jayasinghe
[gmx-users] Simulated Annealing Shan Jayasinghe
[gmx-users] Simulated Annealing Shan Jayasinghe
[gmx-users] Bond breakage modelling Ali Khodayari
[gmx-users] Bond breakage modelling Ali Khodayari
[gmx-users] Bond breakage modelling Ali Khodayari
[gmx-users] Bond breakage modelling Ali Khodayari
[gmx-users] Free Energy code Ali Khodayari
[gmx-users] martini: what is the column position if "ASP" is changed to "ASP0" in the itp file? Peter Kroon
[gmx-users] Position restrained energy minimization Peter Kroon
[gmx-users] gmx trjconv -center not working? Peter Kroon
[gmx-users] Do hydrogen bonds innately exist using mdrun? Peter Kroon
[gmx-users] Bond breakage modelling Peter Kroon
[gmx-users] Bond breakage modelling Peter Kroon
[gmx-users] How to replacing molecule outside the 2.5nm cutoff distance from protein surface in gromacs? Shweta Kumari
[gmx-users] offloading PME to GPUs Kutzner, Carsten
[gmx-users] Compatibility of gromacs 2018.3 with Cuda 10 Kutzner, Carsten
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Kutzner, Carsten
[gmx-users] Atomtype opls_236 not found Justin Lemkul
[gmx-users] Help regarding applying constraint on individual molecule in a system Justin Lemkul
[gmx-users] Atomtype opls_236 not found Justin Lemkul
[gmx-users] Simulated Annealing Justin Lemkul
[gmx-users] Residue name length Justin Lemkul
[gmx-users] Help for using Lincs along with constraint Justin Lemkul
[gmx-users] MD Run Time of Duration Justin Lemkul
[gmx-users] CMAP TORSION ERROR Justin Lemkul
[gmx-users] Trouble getting gmx gyrate to work (Windows/Ubuntu) Justin Lemkul
[gmx-users] Trouble getting gmx gyrate to work (Windows/Ubuntu) Justin Lemkul
[gmx-users] gmx trjconv -center not working? Justin Lemkul
[gmx-users] Ionic conductivity Justin Lemkul
[gmx-users] Distance COM of two systems Justin Lemkul
[gmx-users] CHARMM or AMBETR forcefield for methylated glutamine and glutamic acid. Justin Lemkul
[gmx-users] friction constant for free energy calculation Justin Lemkul
[gmx-users] gmx trjconv -center not working? Justin Lemkul
[gmx-users] gmx trjconv -center not working? Justin Lemkul
[gmx-users] gmx trjconv -center not working? Justin Lemkul
[gmx-users] Problem about Cgenff lone pairs Justin Lemkul
[gmx-users] gmx trjconv -center not working? Justin Lemkul
[gmx-users] gmx trjconv -center not working? Justin Lemkul
[gmx-users] gmx trjconv -center not working? Justin Lemkul
[gmx-users] gmx trjconv -center not working? Justin Lemkul
[gmx-users] Fatal error: Cannot find position restraint file restraint.gro Justin Lemkul
[gmx-users] Do hydrogen bonds innately exist using mdrun? Justin Lemkul
[gmx-users] Fatal Lambda error Justin Lemkul
[gmx-users] Fatal error: Magic Number Error in XTC file Justin Lemkul
[gmx-users] Do hydrogen bonds innately exist using mdrun? Justin Lemkul
[gmx-users] Periodic Boundary Conditions Justin Lemkul
[gmx-users] error in calculating free energy of solvation Justin Lemkul
[gmx-users] How to calculate distance using gromacs? Justin Lemkul
[gmx-users] Select one molecule closest to another molecule for all snapshots Justin Lemkul
[gmx-users] Gromacs Group Project Force-Field Query Justin Lemkul
[gmx-users] issue regarding gromacs software Justin Lemkul
[gmx-users] centroid distance for tyrosine Justin Lemkul
[gmx-users] issue regarding gromacs software Justin Lemkul
[gmx-users] centroid distance for tyrosine Justin Lemkul
[gmx-users] Probability of number of atomic contacts Justin Lemkul
[gmx-users] How to replacing molecule outside the 2.5nm cutoff distance from protein surface in gromacs? Justin Lemkul
[gmx-users] Residue BGC not found in the database Justin Lemkul
[gmx-users] Residue BGC not found in the database Justin Lemkul
[gmx-users] avoid typing input Justin Lemkul
[gmx-users] thread mpi Justin Lemkul
[gmx-users] Residue BGC not found in the database Justin Lemkul
[gmx-users] Fwd: Probability of number of atomic contacts Justin Lemkul
[gmx-users] AWH with two bias potentials Cédric Leyrat
[gmx-users] AWH with two bias potentials Cédric Leyrat
[gmx-users] AWH with two bias potentials Cédric Leyrat
[gmx-users] AWH with two bias potentials Cédric Leyrat
[gmx-users] Simulated Annealing on Gromacs 2019 Li, Shi
[gmx-users] ligand-polymer interaction in triclinic unit cell Wei-Ta Li
[gmx-users] How to calculate distance using gromacs? Qinghua Liao
[gmx-users] Make check not passing tests on 2018.5 David Lister
[gmx-users] Make check not passing tests on 2018.5 David Lister
[gmx-users] Make check not passing tests on 2018.5 David Lister
[gmx-users] Make check not passing tests on 2018.5 David Lister
[gmx-users] Make check not passing tests on 2018.5 David Lister
[gmx-users] calculation of surface tension of a polymer surface Maria Luisa
[gmx-users] calculation of surface tension of a polymer surface_2 Maria Luisa
[gmx-users] Fatal Lambda error Magnus Lundborg
[gmx-users] comm-mode option for applied external electric field. ARNAB MUKHERJEE
[gmx-users] output files g_energy -vis Neila Machado
[gmx-users] g_energy -vis output files Neila Machado
[gmx-users] g_energy -vis output files Neila Machado
[gmx-users] Probability of number of atomic contacts Mahsa
[gmx-users] Probability of number of atomic contacts Mahsa
[gmx-users] Fwd: Probability of number of atomic contacts Mahsa
[gmx-users] Fwd: Probability of number of atomic contacts Mahsa
[gmx-users] Fatal Lambda error Angelina Malagodi
[gmx-users] Fatal Lambda error Angelina Malagodi
[gmx-users] Fatal Lambda error Angelina Malagodi
[gmx-users] pull code, help pulling monomers in the same direction Nawel Mele
[gmx-users] Domain decomposition fatal error during production run Nawel Mele
[gmx-users] Fwd: Phosphorylated serine and threonine residues (Gromacs MD) Najamuddin Memon
[gmx-users] info about gpus Moir, Michael (MMoir)
[gmx-users] info about gpus Moir, Michael (MMoir)
[gmx-users] Radius of gyration and moment of inertia (Dallas Warren) André Farias de Moura
[gmx-users] gmx trjconv -center not working? Benson Muite
[gmx-users] gmx tcaf directions Benson Muite
[gmx-users] Water permeation through a channel of membrane protein Naba
[gmx-users] Assertion failed with single precision only Prithwish Nandi
[gmx-users] Units for electrical-field-x parameters Prithwish Nandi
[gmx-users] Units for electrical-field-x parameters Prithwish Nandi
[gmx-users] Units for electrical-field-x parameters Prithwish Nandi
[gmx-users] Error while running grompp command Nath, Dinesh
[gmx-users] Distance COM of two systems laura O.
[gmx-users] syntax for index file in "gmx distance" laura O.
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Lalehan Ozalp
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Lalehan Ozalp
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Lalehan Ozalp
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Lalehan Ozalp
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Lalehan Ozalp
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Lalehan Ozalp
[gmx-users] Distance COM of two systems Antonio PEÓN
[gmx-users] Total time of ligand in active site Pandya, Akash
[gmx-users] Plotting ligand index number corresponding to minimum distance data Pandya, Akash
[gmx-users] Minimum distance of ligand molecules Pandya, Akash
[gmx-users] gmx select Pandya, Akash
[gmx-users] gmx select help Pandya, Akash
[gmx-users] Generating parameters of Alpha-Ketoglutarate for AMBER FF Pandya, Akash
[gmx-users] Residue numbering in Gromacs and VMD Pandya, Akash
[gmx-users] Atomtype opls_236 not found Anjali Patel
[gmx-users] Atomtype opls_236 not found Anjali Patel
[gmx-users] Simple way to get last structure from trajectory. Sergio Perez
[gmx-users] Simple way to get last structure from trajectory. Sergio Perez
[gmx-users] Simple way to get last structure from trajectory. Sergio Perez
[gmx-users] Unability to generate toplogy files for T3 & T4 residues from 4lnx.pdb Denish Poudyal
[gmx-users] structure Faezeh Pousaneh
[gmx-users] analysis following the equlibration of protein-membrane system Olga Press
[gmx-users] info about gpus Szilárd Páll
[gmx-users] info about gpus Szilárd Páll
[gmx-users] info about gpus Szilárd Páll
[gmx-users] Make check not passing tests on 2018.5 Szilárd Páll
[gmx-users] Make check not passing tests on 2018.5 Szilárd Páll
[gmx-users] offloading PME to GPUs Szilárd Páll
[gmx-users] random initial failure Szilárd Páll
[gmx-users] Make check not passing tests on 2018.5 Szilárd Páll
[gmx-users] Make check not passing tests on 2018.5 Szilárd Páll
[gmx-users] Make check not passing tests on 2018.5 Szilárd Páll
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Szilárd Páll
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Szilárd Páll
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Szilárd Páll
[gmx-users] Error detecting AMD GPU in GROMACS 2019.1 Szilárd Páll
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Szilárd Páll
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Szilárd Páll
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Szilárd Páll
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Szilárd Páll
[gmx-users] Error detecting AMD GPU in GROMACS 2019.1 Szilárd Páll
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Szilárd Páll
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Szilárd Páll
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] gmx trjconv -center not working? Mala L Radhakrishnan
[gmx-users] domain decomposition error >60 ns into simulation on a specific machine Mala L Radhakrishnan
[gmx-users] domain decomposition error >60 ns into simulation on a specific machine Mala L Radhakrishnan
[gmx-users] Position restrained energy minimization Ashraya Ravikumar
[gmx-users] Position restrained energy minimization Ashraya Ravikumar
[gmx-users] TCAF Amin Rouy
[gmx-users] TCAF Amin Rouy
[gmx-users] gmx tcaf directions Amin Rouy
[gmx-users] gmx tcaf directions Amin Rouy
[gmx-users] gmx tcaf directions Amin Rouy
[gmx-users] gmx tcaf directions Amin Rouy
[gmx-users] Osmotic pressure calculation RAHUL SURESH
[gmx-users] Osmotic pressure calculation, regarding RAHUL SURESH
[gmx-users] (no subject) Satya Ranjan Sahoo
[gmx-users] salvation free energy - gmx bar Javier Luque Di Salvo
[gmx-users] MD Run Time of Duration Bruno Santos
[gmx-users] MD Run Time of Duration Bruno Santos
[gmx-users] Compatibility of gromacs 2018.3 with Cuda 10 Sujit Sarkar
[gmx-users] Make check not passing tests on 2018.5 Schulz, Roland
[gmx-users] Make check not passing tests on 2018.5 Schulz, Roland
[gmx-users] Make check not passing tests on 2018.5 Schulz, Roland
[gmx-users] Make check not passing tests on 2018.5 Schulz, Roland
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Schulz, Roland
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Schulz, Roland
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Schulz, Roland
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Schulz, Roland
[gmx-users] Performance of GROMACS on GPU's on ORNL Titan? Michael Shirts
[gmx-users] Fatal error: Cannot find position restraint file restraint.gro Edjan Silva
[gmx-users] Fatal error: Magic Number Error in XTC file Edjan Silva
[gmx-users] How to calculate distance using gromacs? Edjan Silva
[gmx-users] Computational performance in version 2019-beta3. Edjan Silva
[gmx-users] Modulation of protein water intermolecular interactions Sudipta Sinha
[gmx-users] Modulation of protein water intermolecular interactions Sudipta Sinha
[gmx-users] Modulation of protein water intermolecular interactions Sudipta Sinha
[gmx-users] EuroVis MolVA 2019 Deadline Extension (March 8, 2019) Björn Sommer
[gmx-users] centroid distance for tyrosine Archana Sonawani-Jagtap
[gmx-users] centroid distance for tyrosine Archana Sonawani-Jagtap
[gmx-users] centroid distance for tyrosine Archana Sonawani-Jagtap
[gmx-users] Theta and gamma angle between tyrosines Archana Sonawani-Jagtap
[gmx-users] All water molecules inside protein David van der Spoel
[gmx-users] Force field parameters not known Peter Stern
[gmx-users] Force field parameters not known Matthew Stoodley
[gmx-users] Can I take any conformational sub state from REMD Seera Suryanarayana
[gmx-users] WG: Issue with CUDA and gromacs Tafelmeier, Stefanie
[gmx-users] WG: Issue with CUDA and gromacs Tafelmeier, Stefanie
[gmx-users] thread mpi Alexander Tzanov
[gmx-users] thread mpi Alexander Tzanov
[gmx-users] Obtaining opls forcefield Valerio
[gmx-users] Obtaining opls forcefield Valerio
[gmx-users] Obtaining opls forcefield Valerio
[gmx-users] Obtaining opls forcefield Valerio
[gmx-users] issue regarding gromacs software Valerio
[gmx-users] Position restrained energy minimization Quyen Vu
[gmx-users] Interaction energies between atoms Quyen Vu
[gmx-users] Generating parameters of Alpha-Ketoglutarate for AMBER FF Quyen Vu
[gmx-users] How to use reduced unit in gromacs? Quyen Vu
[gmx-users] How to use reduced unit in gromacs? Quyen Vu
[gmx-users] avoid typing input Quyen Vu
[gmx-users] Residue name length András Ferenc WACHA
[gmx-users] Residue name length András Ferenc WACHA
[gmx-users] dt Dallas Warren
[gmx-users] structure Dallas Warren
[gmx-users] ligand-polymer interaction in triclinic unit cell Dallas Warren
[gmx-users] (no subject) Dallas Warren
[gmx-users] The first coordination shell Dallas Warren
[gmx-users] Automatic calculation of several RDFs Dallas Warren
[gmx-users] [gmx-developers] Gromacs Project Query Dallas Warren
[gmx-users] how to increase GMX_OPENMP_MAX_THREADS Dallas Warren
[gmx-users] Error in energy minimization step/could anyone help me Dallas Warren
[gmx-users] Error in energy minimization step/could anyone help me Dallas Warren
[gmx-users] Hydrogen bond calculation Dallas Warren
[gmx-users] Building Gromacs on a MacBook Pro with AMD Radeon Pro 560 Michael Williams
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Michael Williams
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Michael Williams
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Michael Williams
[gmx-users] Ever increasing versions of gromacs and problem of choosing the correct version. Michael Williams
[gmx-users] Compile Gromacs with OpenCL for MacBook Pro with AMD Radeon Pro 560 GPU Michael Williams
[gmx-users] Error detecting AMD GPU in GROMACS 2019.1 Michael Williams
[gmx-users] Error detecting AMD GPU in GROMACS 2019.1 Michael Williams
[gmx-users] Error detecting AMD GPU in GROMACS 2019.1 Michael Williams
[gmx-users] calculate potential energy or short-range and long-range energy and enthalpy per residue milad bagheri
[gmx-users] Error in energy minimization step/could anyone help me banijamali_fs
[gmx-users] GROMACS 2016.6 patch release available Paul bauer
[gmx-users] GROMACS 2019.1 patch release available Paul bauer
[gmx-users] GROMACS 2018.6 patch release available Paul bauer
[gmx-users] info about gpus paul buscemi
[gmx-users] x2top finds 10+ bonds on atoms paul buscemi
[gmx-users] x2top finds 10+ bonds on atoms paul buscemi
[gmx-users] All water molecules inside protein Dawid das
[gmx-users] All water molecules inside protein Dawid das
[gmx-users] Obtaining opls forcefield dgfd dgdfg
[gmx-users] Ever increasing versions of gromacs and problem of choosing the correct version. atb files
[gmx-users] Periodic Boundary Conditions marzieh gharouni
[gmx-users] how to calculate msrd using the tool of gromacs wangshaofeng at iae.ac.cn
[gmx-users] help for debye waller factor calcuations wangshaofeng at iae.ac.cn
[gmx-users] CHARMM or AMBETR forcefield for methylated glutamine and glutamic acid. himanshu joshi
[gmx-users] Residue BGC not found in the database mary ko
[gmx-users] Residue BGC not found in the database mary ko
[gmx-users] Residue BGC not found in the database mary ko
[gmx-users] offloading PME to GPUs jing liang
[gmx-users] offloading PME to GPUs jing liang
[gmx-users] How to use "echo" to output index file with only one command line? lucioric
[gmx-users] Interaction energies between atoms lucioric
[gmx-users] Performance of GROMACS on GPU's on ORNL Titan? pbuscemi at q.com
[gmx-users] issue regarding gromacs software suchita sakore
[gmx-users] issue regarding gromacs software suchita sakore
[gmx-users] error in calculating free energy of solvation daniel madulu shadrack
[gmx-users] Help regarding applying constraint on individual molecule in a system anupama sharma
[gmx-users] Help for using Lincs along with constraint anupama sharma
[gmx-users] chemical potential equivalence aditi singh
[gmx-users] Simple way to get last structure from trajectory. aditi singh
[gmx-users] friction constant for free energy calculation minky son
[gmx-users] avoid typing input antonia vyrkou
[gmx-users] avoid typing input antonia vyrkou
[gmx-users] avoid typing input antonia vyrkou
[gmx-users] Making Polyamide membrane itp file 이영규
[gmx-users] How to use reduced unit in gromacs? 이영규

Last message date: Thu Feb 28 20:44:11 CET 2019
Archived on: Thu Feb 28 20:44:12 CET 2019

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