[gmx-users] convergence of bilayer simulation

Prasanth G, Research Scholar prasanthghanta at sssihl.edu.in
Fri Jul 12 19:54:39 CEST 2019


Dear Justin,

Thank you for your inputs.
After using GridmatMD. I obtained the following results -
Area per lipid is 62.696275 ±  0.545 Angstrom (square)
Average thickness of the upper and lower membranes is 3.66 ± 0.28 Angstrom
(square)
I am also attaching the graphs for lateral displacement of lipids and
density of the lipid along with this mail.
I hope this is sufficient to say that the membrane is equilibrated.
Thank you.

 lateral_diffusion.png
<https://drive.google.com/a/sssihl.edu.in/file/d/1ksjv_VSiS4AtEMF8yyRKJl1lPDDjrPBP/view?usp=drive_web>

 density_lipid.png
<https://drive.google.com/a/sssihl.edu.in/file/d/1tUvQ5O6o-qqjd5pu5U5pEOv-jfYcbjWJ/view?usp=drive_web>


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