[gmx-users] Generating Ramachandran Plot monitoring movie.

[Muneeswaran S]

Good Evening Friends,

                    I had some problem with my MD analysis. I want to
monitor the Ramachandran plot of some residues.

My problem let say I had a tri peptide from which we can get 4 dihedral
angles and we can only plot the ramachandran plot for the Mid residue that
is second residue. Here What I want is some script or Method to monitor the
changes occur in the Ramachandran plot during the simulation period.  Let
say I have 1000 saved frames each frame has it own Ramachandran plot I want
like 40 sec or less duration movie or of the Ramachandran plot from frame 1
to 1000. Them I can monitor the the path in which the peptide secondary
structures changes from the frame 1 to 1000.

                             Thank You.