[gmx-users] compressed pbc box at the end of simulation - membrane protein with ligand

[Prasanth G, Research Scholar]

Dear Bratin,

Thank you for your prompt response. would using an isotropic pcoupletype
have any effect on a membrane protein simulation?
If we provide same ref_p values for all three axis (as in the above case)in
a semiisotropic treatment, would this have the same effect as isotropic
treatment?
I would be grateful if anyone can share the template of the mdp files for a
membrane protein simulation.

Thank you again.
Regards.