[gmx-users] Topology for CARG for Amber94 FF

Pandya, Akash akash.pandya.15 at ucl.ac.uk
Wed Jun 26 13:17:55 CEST 2019


Hi all,

I'm trying to generate a topology for CARG using pdb2gmx for Amber94 FF but I'm getting this error :

Fatal error:
There is a dangling bond at at least one of the terminal ends and the force
field does not provide terminal entries or files. Fix your terminal residues
so that they match the residue database (.rtp) entries, or provide terminal
database entries (.tdb).

Could someone please guide me on how to fix this error?

Akash


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