[gmx-users] errors during installation

kalpana kalpanadynasty at gmail.com
Fri Jun 28 14:13:37 CEST 2019


Hi everyone,
I had to reinstall gromacs and now I getting following errors during make
check with provided settings. Kindly suggest better settings with which I
could run mdrun faster becz my previous installations was with same
settings but was very slow (mdrun -deffnm md_0_1 -ntmpi 2 -ntomp 6 -pin on
-v).

sudo cmake .. -DGMX_BUILD_OWN_FFTW=OFF -DREGRESSIONTEST_DOWNLOAD=OFF
-DCMAKE_C_COMPILER=gcc -DGMX_SIMD=AVX_512 -DGMX_GPU=ON
-DCUDA_TOOLKIT_ROOT_DIR=/usr/local/cuda -DGMX_USE_RDTSCP=ON
-DGMX_FFT_LIBRARY=fftw3 -DCMAKE_BUILD_TYPE=Debug
-DREGRESSIONTEST_PATH=/Downloads/gromacs/regressiontests-2019.3


The following tests FAILED:
 2 - TestUtilsMpiUnitTests (Failed)
14 - MdrunUtilityMpiUnitTests (Failed)
22 - UtilityMpiUnitTests (Failed)
27 - CompatibilityHelpersTests (Timeout)
29 - GmxPreprocessTests (Timeout)
41 - regressiontests/simple (Failed)
42 - regressiontests/complex (Failed)
43 - regressiontests/kernel (Failed)
44 - regressiontests/freeenergy (Failed)
45 - regressiontests/rotation (Failed)
46 - regressiontests/essentialdynamics (Failed)
Errors while running CTest
make[3]: *** [CMakeFiles/run-ctest-nophys.dir/build.make:58:
CMakeFiles/run-ctest-nophys] Error 8
make[2]: *** [CMakeFiles/Makefile2:1237:
CMakeFiles/run-ctest-nophys.dir/all] Error 2
make[1]: *** [CMakeFiles/Makefile2:1048: CMakeFiles/check.dir/rule] Error 2
make: *** [Makefile:574: check] Error 2


Thanks & regards,
Kalpana


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