[gmx-users] Pore size calculation

pbuscemi at q.com pbuscemi at q.com
Tue Mar 12 14:26:36 CET 2019


What do you mean by pore size?  A hole in the membrane caused by external
tension ?  The space occupied by the protein ? Does lipid occupy the walls
of the pore ?


-----Original Message-----
From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se
<gromacs.org_gmx-users-bounces at maillist.sys.kth.se> On Behalf Of RAHUL
Sent: Tuesday, March 12, 2019 6:23 AM
To: gmx-users at gromacs.org
Subject: [gmx-users] Pore size calculation

Hi. I have a Protein_POPC bilayer system, simulated for 1000ns.

Is it possible to calculate the pore size of the membrane protein?
I tried a tool gmx_hole, but ended up with an unnotified error.

Can anyone help me with this?

Thanks in advance
*Rahul *
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