[gmx-users] Pore size calculation

[pbuscemi at q.com]

Rahul,

What do you mean by pore size?  A hole in the membrane caused by external
tension ?  The space occupied by the protein ? Does lipid occupy the walls
of the pore ?

Paul

-----Original Message-----
From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se
<gromacs.org_gmx-users-bounces at maillist.sys.kth.se> On Behalf Of RAHUL
SURESH
Sent: Tuesday, March 12, 2019 6:23 AM
To: gmx-users at gromacs.org
Subject: [gmx-users] Pore size calculation

Hi. I have a Protein_POPC bilayer system, simulated for 1000ns.

Is it possible to calculate the pore size of the membrane protein?
I tried a tool gmx_hole, but ended up with an unnotified error.

Can anyone help me with this?

Thanks in advance
-- 
*Regards,*
*Rahul *
-- 
Gromacs Users mailing list

* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a
mail to gmx-users-request at gromacs.org.