[gmx-users] Berendsen Barostat for production runs
bauer at cbs.tu-darmstadt.de
Thu Mar 28 13:16:39 CET 2019
I know that the usage of Berendsen baraostat for production runs is
generally discouraged because it does not give a correct ensemble
average. Nevertheless, I found some recent publications where this is
done (presumably for performance reasons). Example: 10.1126/science.1254840
What would be a justification that allows to do this? Under what
conditions is it "ok" and when is it not? An explanation attempt by me
is that Berendsen is fine if we do not try to investigate properties of
the system that depend on the ensemble average (i.e ion conduction events).
Daniel Bauer, M.Sc.
Computational Biology & Simulation
bauer at bio.tu-darmstadt.de
Don't trust atoms, they make up everything.
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