[gmx-users] 2019.2 build warnings

[Alex]

Oh, cool -- thanks! I guess we will be replacing the older builds, then.

Funny enough, you may not recall it, but the hardware for particular box 
was purchased with your own advice, which served us very well up until 
now. :)

Again, thank you.

Alex

On 5/1/2019 5:07 AM, Szilárd Páll wrote:
> Hi,
>
> You can safely ignore the errors as these are caused by properties of your
> hardware that the test scripts are not dealing well enough -- though
> admittedly, two of the three errors should be avoided along a message
> similar to this
> "Mdrun cannot use the requested (or automatic) number of OpenMP threads,
> retrying with 8."
> (which is what I get when I run the tests on a similar machine).
>
> If you need the tests to pass on the node in question, let me know, I can
> suggest workarounds.
>
> Cheers,
> --
> Szilárd
>
>
> On Mon, Apr 29, 2019 at 6:47 PM Alex <nedomacho at gmail.com> wrote:
>
>> Hi Szilárd,
>>
>> Since I don't know which directory inside /complex corresponds to which
>> tests (at least one of the tests that failed was #42), here's a tarball
>> of the entire /complex directory per location you specified below:
>>
>>
>> https://www.dropbox.com/s/44uluopkdan2417/regression_complex_2019.2.tar.gz?dl=0
>>
>> If you can help us figure this out, it will be great!
>>
>> Thanks,
>>
>> Alex
>>
>> On 4/29/2019 4:25 AM, Szilárd Páll wrote:
>>> Hi,
>>>
>>> I assume you used -DREGRESSIONTEST_DOWNLOAD=ON case in which the tests
>> are
>>> downloaded and unpacked under
>>> BUILD_TREE/tests/regressiontests-release-2019-[SUFFIX]/
>>>
>>> In that directory you find the usual regressiontests tree, from there
>> under
>>> complex/ you'll find the tests in question.
>>>
>>> Cheers,
>>> --
>>> Szilárd
>>>
>>>
>>> On Fri, Apr 26, 2019 at 7:00 PM Alex <nedomacho at gmail.com> wrote:
>>>
>>>> Hi Szilárd,
>>>>
>>>> I am at a conference right now, but will do my best to upload the
>>>> requested data first thing on Monday. In the meantime, could you please
>>>> tell me where the stuff of interest would be located within the local
>>>> gromacs build directory? I mean, I could make the entire directory a
>>>> tarball, but not sure it's all that necessary. I don't remember which
>> tests
>>>> failed, unfortunately...
>>>>
>>>> Thank you!
>>>>
>>>> Alex
>>>>
>>>> On 4/25/2019 2:54 AM, Szilárd Páll wrote:
>>>>> Hi Alex,
>>>>>
>>>>> On Wed, Apr 24, 2019 at 9:59 PM Alex <nedomacho at gmail.com> wrote:
>>>>>
>>>>>> Hi Szilárd,
>>>>>>
>>>>>> We are using neither Ubuntu 18.04, nor glibc 2.27, but the problem is
>>>>>> most certainly there.
>>>>> OK.
>>>>>
>>>>> Can you please post the content of the directories of tests that
>> failed?
>>>> It
>>>>> would be useful to know the exact software configuration (reported in
>> the
>>>>> log) and the details of the errors (reported in the mdrun.out).
>>>>>
>>>>> Thanks,
>>>>> --
>>>>> Szilárd
>>>>>
>>>>>
>>>>>
>>>>>> Until the issue is solved one way or another, we
>>>>>> will be staying with 2018.1, i guess.
>>>>>>
>>>>>> $ lsb_release -a
>>>>>>
>>>>>> No LSB modules are available.
>>>>>>
>>>>>> Distributor ID: Ubuntu
>>>>>>
>>>>>> Description:    Ubuntu 16.04.6 LTS
>>>>>>
>>>>>> Release:        16.04
>>>>>>
>>>>>> Codename:       xenial
>>>>>>
>>>>>> Ubuntu GLIBC 2.23-0ubuntu11
>>>>>>
>>>>>>
>>>>>> On 4/24/2019 4:57 AM, Szilárd Páll wrote:
>>>>>>> What OS are you using? There are some known issues with the Ubuntu
>>>> 18.04
>>>>>> +
>>>>>>> glibc 2.27 which could explain the errors.
>>>>>>> --
>>>>>>> Szilárd
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>> --
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