[gmx-users] 2019.2 build warnings

[Alex]

Hi Szilárd,

Thanks a bunch. I have upgraded to 2019.2 and a fairly large 
"production" test seems to be running without any issues.

Alex

On 5/1/2019 5:07 AM, Szilárd Páll wrote:
> Hi,
>
> You can safely ignore the errors as these are caused by properties of your
> hardware that the test scripts are not dealing well enough -- though
> admittedly, two of the three errors should be avoided along a message
> similar to this
> "Mdrun cannot use the requested (or automatic) number of OpenMP threads,
> retrying with 8."
> (which is what I get when I run the tests on a similar machine).
>
> If you need the tests to pass on the node in question, let me know, I can
> suggest workarounds.
>
> Cheers,
> --
> Szilárd
>
>
> On Mon, Apr 29, 2019 at 6:47 PM Alex <nedomacho at gmail.com> wrote:
>
>> Hi Szilárd,
>>
>> Since I don't know which directory inside /complex corresponds to which
>> tests (at least one of the tests that failed was #42), here's a tarball
>> of the entire /complex directory per location you specified below:
>>
>>
>> https://www.dropbox.com/s/44uluopkdan2417/regression_complex_2019.2.tar.gz?dl=0
>>
>> If you can help us figure this out, it will be great!
>>
>> Thanks,
>>
>> Alex
>>
>> On 4/29/2019 4:25 AM, Szilárd Páll wrote:
>>> Hi,
>>>
>>> I assume you used -DREGRESSIONTEST_DOWNLOAD=ON case in which the tests
>> are
>>> downloaded and unpacked under
>>> BUILD_TREE/tests/regressiontests-release-2019-[SUFFIX]/
>>>
>>> In that directory you find the usual regressiontests tree, from there
>> under
>>> complex/ you'll find the tests in question.
>>>
>>> Cheers,
>>> --
>>> Szilárd
>>>
>>>
>>> On Fri, Apr 26, 2019 at 7:00 PM Alex <nedomacho at gmail.com> wrote:
>>>
>>>> Hi Szilárd,
>>>>
>>>> I am at a conference right now, but will do my best to upload the
>>>> requested data first thing on Monday. In the meantime, could you please
>>>> tell me where the stuff of interest would be located within the local
>>>> gromacs build directory? I mean, I could make the entire directory a
>>>> tarball, but not sure it's all that necessary. I don't remember which
>> tests
>>>> failed, unfortunately...
>>>>
>>>> Thank you!
>>>>
>>>> Alex
>>>>
>>>> On 4/25/2019 2:54 AM, Szilárd Páll wrote:
>>>>> Hi Alex,
>>>>>
>>>>> On Wed, Apr 24, 2019 at 9:59 PM Alex <nedomacho at gmail.com> wrote:
>>>>>
>>>>>> Hi Szilárd,
>>>>>>
>>>>>> We are using neither Ubuntu 18.04, nor glibc 2.27, but the problem is
>>>>>> most certainly there.
>>>>> OK.
>>>>>
>>>>> Can you please post the content of the directories of tests that
>> failed?
>>>> It
>>>>> would be useful to know the exact software configuration (reported in
>> the
>>>>> log) and the details of the errors (reported in the mdrun.out).
>>>>>
>>>>> Thanks,
>>>>> --
>>>>> Szilárd
>>>>>
>>>>>
>>>>>
>>>>>> Until the issue is solved one way or another, we
>>>>>> will be staying with 2018.1, i guess.
>>>>>>
>>>>>> $ lsb_release -a
>>>>>>
>>>>>> No LSB modules are available.
>>>>>>
>>>>>> Distributor ID: Ubuntu
>>>>>>
>>>>>> Description:    Ubuntu 16.04.6 LTS
>>>>>>
>>>>>> Release:        16.04
>>>>>>
>>>>>> Codename:       xenial
>>>>>>
>>>>>> Ubuntu GLIBC 2.23-0ubuntu11
>>>>>>
>>>>>>
>>>>>> On 4/24/2019 4:57 AM, Szilárd Páll wrote:
>>>>>>> What OS are you using? There are some known issues with the Ubuntu
>>>> 18.04
>>>>>> +
>>>>>>> glibc 2.27 which could explain the errors.
>>>>>>> --
>>>>>>> Szilárd
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>> --
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