[gmx-users] Polymer parameter preparation using CHARMM-GUI

[Mijiddorj B]

Dear gmx users,

I trying to prepare the parameters of polymer which consists of a number of
units for gromacs calculations. A references (
https://www.cell.com/biophysj/pdf/S0006-3495(18)34339-X.pdf) introduced the
polymer builder in charmm-gui. However, I could not find this application
in CHARMM-GUI web.
How can I prepare the long polymer structures and corresponding parameters?
If you do not mind, please advice me.

Best regards,
Mijiddorj


>
> ------------------------------
>
> Message: 2
> Date: Tue, 5 Nov 2019 15:18:34 +0900
> From: Mijiddorj B <b.mijiddorj at gmail.com>
> To: gromacs.org_gmx-users at maillist.sys.kth.se
> Subject: [gmx-users] Polymer parameter preparation using CHARMM-GUI
> Message-ID:
>         <CABgRApsbUa591KZz9ru_79k=YSGmbbiz32xp8kheKx7=
> kK_oTA at mail.gmail.com>
> Content-Type: text/plain; charset="UTF-8"
>
> Dear gmx users,
>
> I trying to prepare the parameters of polymer which consists of a number of
> units for gromacs calculations. A references (
> https://www.cell.com/biophysj/pdf/S0006-3495(18)34339-X.pdf) introduced
> the
> polymer builder in charmm-gui. However, I could not find this application
> in CHARMM-GUI web.
> How can I prepare the long polymer structures and corresponding parameters?
> If you do not mind, please advice me.
>
> Best regards,
> Mijiddorj
>
>
> ------------------------------
>
>