[gmx-users] Polymer parameter preparation using CHARMM-GUI

[Justin Lemkul]

On 11/6/19 4:31 AM, Mijiddorj B wrote:
> Dear gmx users,
>
> I trying to prepare the parameters of polymer which consists of a number of
> units for gromacs calculations. A references (
> https://www.cell.com/biophysj/pdf/S0006-3495(18)34339-X.pdf) introduced the
> polymer builder in charmm-gui. However, I could not find this application
> in CHARMM-GUI web.
> How can I prepare the long polymer structures and corresponding parameters?
> If you do not mind, please advice me.

I suggest you direct CHARMM-GUI questions to their developers. This is 
not a GROMACS issue.

-Justin

> Best regards,
> Mijiddorj
>
>
>> ------------------------------
>>
>> Message: 2
>> Date: Tue, 5 Nov 2019 15:18:34 +0900
>> From: Mijiddorj B <b.mijiddorj at gmail.com>
>> To: gromacs.org_gmx-users at maillist.sys.kth.se
>> Subject: [gmx-users] Polymer parameter preparation using CHARMM-GUI
>> Message-ID:
>>          <CABgRApsbUa591KZz9ru_79k=YSGmbbiz32xp8kheKx7=
>> kK_oTA at mail.gmail.com>
>> Content-Type: text/plain; charset="UTF-8"
>>
>> Dear gmx users,
>>
>> I trying to prepare the parameters of polymer which consists of a number of
>> units for gromacs calculations. A references (
>> https://www.cell.com/biophysj/pdf/S0006-3495(18)34339-X.pdf) introduced
>> the
>> polymer builder in charmm-gui. However, I could not find this application
>> in CHARMM-GUI web.
>> How can I prepare the long polymer structures and corresponding parameters?
>> If you do not mind, please advice me.
>>
>> Best regards,
>> Mijiddorj
>>
>>
>> ------------------------------
>>
>>

-- 
==================================================

Justin A. Lemkul, Ph.D.
Assistant Professor
Office: 301 Fralin Hall
Lab: 303 Engel Hall

Virginia Tech Department of Biochemistry
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129
http://www.thelemkullab.com

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