[gmx-users] Molecule contains no atoms

Tanos Franca tanosfranca at gmail.com
Fri Sep 6 17:14:14 CEST 2019


Dear users,
GROMACS 5.1.4 is returning the error message below after running grompp
with stpr.mdp. Does anyone knows how to fix it?

Program gmx grompp, VERSION 5.1.4
Source code file:
/home/cuda1/Downloads/gromacs-5.1.4/src/gromacs/gmxpreprocess/topio.c,
line: 1001

Fatal error:
Molecule type 'MOL' contains no atoms
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors


Best regards
Tanos França.


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