September 2019 Archives by thread
Starting: Sun Sep 1 11:37:25 CEST 2019
Ending: Mon Sep 30 19:11:42 CEST 2019
Messages: 328
- [gmx-users] Domain decomposition error while running coarse grained simulations on cluster
Avijeet Kulshrestha
- [gmx-users] wham analysis
Negar Parvizi
- [gmx-users] mdrun error
m g
- [gmx-users] wham analysis
Negar Parvizi
- [gmx-users] simulation termination problem
Prabir Khatua
- [gmx-users] regarding changing the scale from ps to ns
sudha bhagwati
- [gmx-users] Forcefield parameter for transition metal
Srijan Chatterjee
- [gmx-users] gromacs.org_gmx-users Digest, Vol 185, Issue 3
Avijeet Kulshrestha
- [gmx-users] benchmark of RIB
tarzan p
- [gmx-users] How to run multiple (different) distance restrains in the same simulation?
Tanos Franca
- [gmx-users] limit to the number of QM atoms in a QM/MM simulation?
Kristina Woods
- [gmx-users] How to Calculate tetrahedral order parameter
Soham Sarkar
- [gmx-users] limit to the number of QM atoms in a QM/MM simulation?
Kristina Woods
- [gmx-users] Domain decomposition error while running coarse grained simulations on cluster
Avijeet Kulshrestha
- [gmx-users] limit to the number of QM atoms in a QM/MM simulation?
Kristina Woods
- [gmx-users] Tyrosine to phosphotyrosine conversion a must in phosphorylation protein ?
Seketoulie Keretsu
- [gmx-users] REMD-error
Bratin Kumar Das
- [gmx-users] Channelrhodopsin topology
vicolls at fizyka.umk.pl
- [gmx-users] The problem of utilizing multiple GPU
sunyeping
- [gmx-users] how to define a pair
nahren manuel
- [gmx-users] how to define a pair
nahren manuel
- [gmx-users] Question about the pulling code
Tingguang.S
- [gmx-users] The problem of utilizing multiple GPU
孙业平
- [gmx-users] Spatial Distribution Function
Pandya, Akash
- [gmx-users] question about tabulated force field
Liu, Y.
- [gmx-users] gromacs binaries for windows (Cygwin 64)
Tatsuro MATSUOKA
- [gmx-users] Fatal error: Atom O4 in residue GLU 7 was not found in rtp entry
Navneet Kumar Singh
- [gmx-users] simulation on 2 gpus
Stefano Guglielmo
- [gmx-users] Unit cell box around membrane
daniel depope
- [gmx-users] Molecule contains no atoms
Tanos Franca
- [gmx-users] Non-bonded interactions settings using Amber
Dawid das
- [gmx-users] Fat-bottom restrain
Alex
- [gmx-users] Ionization with different ions of different concentrations
Mohammed I Sorour
- [gmx-users] Application of External Forces on Lipid Membrane
Shivam Suthendran
- [gmx-users] The problem of utilizing multiple GPU
sunyeping
- [gmx-users] gromacs lincs warning: relative constraint deviation after lincs
rajat punia
- [gmx-users] pressure is coming 1.39
Bratin Kumar Das
- [gmx-users] Wpull from pullf.xvg
Bakary N'tji Diallo
- [gmx-users] Residue 'UNK' not found in residue topology database
Navneet Kumar Singh
- [gmx-users] Obtaining AMBER parameters for Mn2+ and zwitterion form Arginine
Pandya, Akash
- [gmx-users] (no subject)
Elham Zaroorati
- [gmx-users] Cannot run short-ranged nonbonded interactions on a GPU
Mahmood Naderan
- [gmx-users] REMD
Omkar Singh
- [gmx-users] Why does "system is not well equilibrated" error come out when using multiple GPUs but not one GPUs?
孙业平
- [gmx-users] Load imbalancing
Bratin Kumar Das
- [gmx-users] optimizing GAFF2 torsional parameters
Christos Deligkaris
- [gmx-users] Solvent is added inconsistently
Dawid das
- [gmx-users] DSSP graph re-scale
SGR160055 Student
- [gmx-users] mdrun error
KRISHNA PRASAD GHANTA
- [gmx-users] MSVC or later now supports AVX2 and AVX_512
Tatsuro MATSUOKA
- [gmx-users] grompp not possible with annealing - Gromacs 2019.1
Tafelmeier, Stefanie
- [gmx-users] gmx pairdist help
Pandya, Akash
- [gmx-users] How to use gmx h2order when using four point water model
Jun Zhou
- [gmx-users] Using -multidir option on Cray (aprun)
Suman Chakrabarty
- [gmx-users] Steered MD:Setup box in the pulling vector direction and position restraint for protein?
Bakary N'tji Diallo
- [gmx-users] Delete Groups from gro file
Gselman, Larissa
- [gmx-users] Domain decomposition error while running coarse grained simulations on cluster
Avijeet Kulshrestha
- [gmx-users] compressibility
m g
- [gmx-users] Ramachandran Plot for a Polymer
Shan Jayasinghe
- [gmx-users] SMD options
Stefano Guglielmo
- [gmx-users] Fwd: query
Nirali Desai
- [gmx-users] How can Build gromacs using MSVC on Win64 with AVX2?
Tatsuro MATSUOKA
- [gmx-users] Entropic effects in PMF at zero distance
dgfd dgdfg
- [gmx-users] Residue 'UNK' not found in residue topology database
Navneet Kumar Singh
- [gmx-users] Amber 14SB force-field problem with residue HID
Kevin
- [gmx-users] Regarding reliability of MD simulation
ISHRAT JAHAN
- [gmx-users] error got while xpm2ps
Kanwal Gill
- [gmx-users] Regarding obtaining potential energy using energy groups
Nirali Desai
- [gmx-users] Batch mode error in GROMACS version 2019.2
Rajib Biswas
- [gmx-users] PMF wrong when calculating dihedral angle rotate
yujie Liu
- [gmx-users] gromacs binaries for windows (Cygwin 64)
yujie Liu
- [gmx-users] What is the equivalent command for insert-molecules in Gromacs 3.3.1?
ZHANG Cheng
- [gmx-users] RMSD analysis and stability
Quin K
- [gmx-users] gromacs.org_gmx-users Digest, Vol 185, Issue 50
Nirali Desai
- [gmx-users] Issues with energy minimization of a membrane protein
Prasanth G, Research Scholar
- [gmx-users] Ionization: Your solvent group size (76663) is not a multiple of 3
Mohammed I Sorour
- [gmx-users] RAM usage of gmx msd
Martin Kern
- [gmx-users] Equilibration Problem.
Navneet Kumar Singh
- [gmx-users] gromacs.org_gmx-users Digest, Vol 185, Issue 55
ABEL Stephane
- [gmx-users] Subject: RAM usage of gmx msd5
ABEL Stephane
- [gmx-users] Direction-periodic confusion
John Whittaker
- [gmx-users] Small ligand activators molecule
Shivangi Agarwal
- [gmx-users] Slab shifts out of the simulation box
Mohammed Hamza
- [gmx-users] SIMD options - detection program issue
Stefano Guglielmo
- [gmx-users] gmx trjorder help
Pandya, Akash
- [gmx-users] -t option?
Hadi Rahmaninejad
- [gmx-users] Tetrahedral Order Parameter
m g
- [gmx-users] Tesla GPUs: P40 or P100?
Matteo Tiberti
- [gmx-users] Energy minimization problem for POPE/POPG soluted bilayer taken from M. Karttunen website
daniel depope
- [gmx-users] Center of mass of ligand
Naveen BK
- [gmx-users] Amber 14SB force-field problem with residue HID
Man Hoang Viet
- [gmx-users] simulation continuation without -t option
Prabir Khatua
- [gmx-users] CHARMM GUI membrane builder's assembled output
Yogesh Sharma
- [gmx-users] Simulated Annealing Procedure
Neena Susan Eappen
- [gmx-users] Functional dynamics in gromacs
Gustavo Olivos
- [gmx-users] question on system blow-up
Lei Qian
- [gmx-users] Position Restraints MD
ISHRAT JAHAN
- [gmx-users] Free webinar on accelerating sampling in GROMACS with the AWH method
Paul bauer
- [gmx-users] Fatal error in atom
Nandu TG
- [gmx-users] gromos force field
p buscemi
- [gmx-users] ndx file
Omkar Singh
- [gmx-users] index.ndx file of all cluster
Alex
- [gmx-users] Panelty score for CGenFF
Quin K
- [gmx-users] units
antonia vyrkou
- [gmx-users] OPLS AA/M pdb2gmx error with inter
Daniel Kozuch
- [gmx-users] Atom type 'AS' not currently supported by GROMOS.
Yogesh Sharma
- [gmx-users] potential
ÁLVARO RODRIGO RUIZ FERNÁNDEZ
- [gmx-users] Neena Susan Eappen shared "C_Terminus" with you.
Neena Susan Eappen
- [gmx-users] Problem with adding New peptide Terminus
Neena Susan Eappen
- [gmx-users] Getting non-bonded forces from GROMACS
James
- [gmx-users] GROMACS Domain decomposition
NguyenDuyVy
- [gmx-users] Umbrella sampling on lipid bilayer
Mahsa Rezaei
- [gmx-users] [gmx-user] CGenFF 4.0 vs 4.1, complex MD simulation.
Quin K
- [gmx-users] Cannot Generate .gro and .cpt files after running nvt
Chenyu Liu
- [gmx-users] Cannot Generate .gro and .cpt files after running nvt
Chenyu Liu
- [gmx-users] Getting non-bonded forces from GROMACS
James
- [gmx-users] issues running virus capsid simulation
Asis Jana
- [gmx-users] Ligand molecule occupancy
Pandya, Akash
- [gmx-users] Umbrella sampling on lipid bilayer
Mahsa Rezaei
- [gmx-users] First beta release of GROMACS 2020
Paul bauer
- [gmx-users] Recreating newer TPRs for old Gromacs
Jernej Zidar
- [gmx-users] Recreating newer TPRs for old Gromacs (Jernej Zidar)
ABEL Stephane
- [gmx-users] Fwd: ion flux counter
Harutyun Sahakyan
- [gmx-users] Alchemical Transformation PosRes State B
Johannes Hermann
- [gmx-users] Running iteration for lipid shrinking using InflateGRO methodology
Yogesh Sharma
- [gmx-users] Regarding RDF
Ashma Khan
- [gmx-users] Protein ligand simulation
DEEPANSHU SINGLA
- [gmx-users] Gromacs2019 + Gaussian09 QMMM
nikolaev at spbau.ru
- [gmx-users] (no subject)
Mahsa Rezaei
- [gmx-users] Umbrella sampling on lipid bilayer
Mahsa Rezaei
- [gmx-users] various issues when simulating cholesterol membrane
Ayesha Fatima
- [gmx-users] Gromacs2019 + Gaussian09 QMMM
Groenhof, Gerrit
- [gmx-users] Pull Code
Johannes Hermann
- [gmx-users] gmx traj ekrot : too many iterations in routine JACOBI
Marlon Sidore
- [gmx-users] How to handle calcium ions with charmm36 force field
sunyeping
Last message date:
Mon Sep 30 19:11:42 CEST 2019
Archived on: Mon Sep 30 19:11:43 CEST 2019
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