[gmx-users] RMSD analysis and stability

[Quin K]

Hi everyone!

I have done a MD simulation for a protein structure at 310K (100ns) this is
the RMSD at around 65 ns kindly comment on the stability. Will I have to
rerun the MD?
Kindly let me know how to decide stability by analyzing RMSD.
For backbone
<https://drive.google.com/file/d/18JjiAKivbWklIXRSVaqhQ2zMUN9L_hkl/view?usp=sharing>
For backbone xvg file
<https://drive.google.com/file/d/12MBTO57f_xROW5mWTFtMskwTNL1gCvam/view?usp=sharing>
For protein
<https://drive.google.com/file/d/1LrdIFxQ-rBrIkcgbnfgEHg424cKgGm7_/view>
For protein - expanded
<https://drive.google.com/file/d/1yvwLzdYMAenL9n1kOdaVzOo5JU6j4YU-/view>
For protein xvg file
<https://drive.google.com/file/d/1hKbbTOCLqG7xDySQ7r4VcrNfSaokmYJO/view?usp=sharing>


Thank you in advance.

Regards!

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