[gmx-users] Fatal error in atom

Nandu TG tg.nandu at gmail.com
Sat Sep 21 09:06:30 CEST 2019

I am beginner wit Gromacs, I am getting following error message during run.
It would be highly appreciable if you helped me solve the problem.

Fatal error:
Residue 119 named GLY of a molecule in the input file was mapped
to an entry in the topology database, but the atom CA used in
that entry is not found in the input file. Perhaps your atom
and/or residue naming needs to be fixed.

Thanking you

Nandu T G
Senior Research Fellow
Division of Microbiology
Jawaharlal Nehru Tropical Botanic Garden and Research Institute
Palode, Karimancode
Kerala, India.

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