[gmx-users] Bonds definition in itp files

Sina Omrani sinaomrani96 at gmail.com
Mon Apr 6 13:24:31 CEST 2020


Hi,
I wanted to know how we specify a bond order in our simulation? For
example, if we have a triple bond in our structure between atoms 1 and 2,
is it by length and force constants or we define 1 and 2 bonds three times
in the bond section of itp file?
What if we use a constraint on this bond? because I get better results when
I define the bond three times but haven't seen this method. is it wrong?

Thank you.
Sina Omrani.


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