[gmx-users] 12 bead mapping of lipid

[Sahil Lall]

Hello, 

I see the problem now. You are right, the backmapping files have the 13
bead POPS rather that the latest 12 bead POPS. As far as I know the
backmapping files have not been publicly updated but you could try the
Martini forum. If the exact lipid coordinates are absolutely essential
to your results, I guess you might have to create a new map file
yourself. Otherwise, if a lipid bilayer is all you seek, you could
always add newer all atom lipids in the process of transformation. 

- 

Sahil 

On 2020-03-07 01:39, Rabeta Yeasmin wrote:

> Hi,
> 
> I have run some coarse-grained simulations in GROMACS and now I am trying
> to learn converting back the system to all-atom. I have set up the
> coarse-grained system in CHARMM-GUI, They did not provide the mapping files
> and the mapping files all I found in MARTINI website has 13 beads for POPS,
> but my system POPS has 12 beads. That's why I am looking for newest mapping
> of POPS lipid.
> Thanks.
> 
> Rabeta Yeasmin