March 2020 Archives by author

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Starting: Sun Mar 1 09:41:25 CET 2020
Ending: Tue Mar 31 18:59:51 CEST 2020
Messages: 364

[gmx-users] energy minimization in vacuum Deepanshi .
[gmx-users] core dump Mohamed Abdelaal
[gmx-users] GROMACS automation Mohamed Abdelaal
[gmx-users] GROMACS automation Mohamed Abdelaal
[gmx-users] GROMACS automation Mohamed Abdelaal
[gmx-users] GROMACS automation Mohamed Abdelaal
[gmx-users] Temperature and Pressure coupling in NVT.mdp, NPT.mdp and md.mdp Mohamed Abdelaal
[gmx-users] Temperature and Pressure coupling in NVT.mdp, NPT.mdp and md.mdp Mohamed Abdelaal
[gmx-users] Generating velocities Mohamed Abdelaal
[gmx-users] Negative Pressure during equilibration Mark Abraham
[gmx-users] Gromacs 2020 Mark Abraham
[gmx-users] Gromacs 2020 Mark Abraham
[gmx-users] Troubleshooting Generic Floating Point Exception Errors Mark Abraham
[gmx-users] query regarding running simulation using GPU Mark Abraham
[gmx-users] Nose-Hoover vs Berendsen vs V-rescale Mark Abraham
[gmx-users] checkpoint files with replica exchange/ -multidir Mark Abraham
[gmx-users] checkpoint files with replica exchange/ -multidir Mark Abraham
[gmx-users] k-space settings in GROMACS Mark Abraham
[gmx-users] Energy values for 1 step NVT/NVE simulation of 100 water molecules Mark Abraham
[gmx-users] Energy values for 1 step NVT/NVE simulation of 100 water molecules Mark Abraham
[gmx-users] Failed HardwareTopologyTest on Install (GROMACS 2019.4) Mark Abraham
[gmx-users] Various questions related to Gromacs performance tuning Mark Abraham
[gmx-users] compilation error in multidimarray.h Mark Abraham
[gmx-users] Per atom energies Mark Abraham
[gmx-users] distance restraints between different chains Oscar Hernandez Alba
[gmx-users] gmx traj Alex
[gmx-users] Reproducibility of a PMF plot Alex
[gmx-users] Fwd: Reproducibility of a PMF plot Alex
[gmx-users] comm-grps Alex
[gmx-users] comm-grps Alex
[gmx-users] Thin film drifting Alex
[gmx-users] Thin film drifting Alex
[gmx-users] Thin film drifting Alex
[gmx-users] Thin film drifting Alex
[gmx-users] NVT.mdp running in 4.6 version but failed in VERSION 5.1.2 Rana Ali
[gmx-users] Bug or Feature? Energy Minimization + Restraints + Polarization Possible Issue? Jones De Andrade
[gmx-users] Can drude shell positions be minimized with keeping atoms positions restrained? Jones De Andrade
[gmx-users] Failed HardwareTopologyTest on Install (GROMACS 2019.4) Adam Antoszewski
[gmx-users] replica exchange simulations performance issues. Miro Astore
[gmx-users] replica exchange simulations performance issues. Miro Astore
[gmx-users] replica exchange simulations performance issues. Miro Astore
[gmx-users] replica exchange simulations performance issues. Miro Astore
[gmx-users] replica exchange simulations performance issues. Miro Astore
[gmx-users] Extraction of frames at different interval Farida Aziz
[gmx-users] Setting a electric field in a simulation Mijiddorj B
[gmx-users] Setting a electric field in a simulation Mijiddorj B
[gmx-users] Electric field Mijiddorj B
[gmx-users] Extracting temperature of specific groups during the simulations Mijiddorj B
[gmx-users] Extracting temperature of specific groups during the simulations Mijiddorj B
[gmx-users] Parametrization of Mn(ii) in charmm force field Pranav BVN
[gmx-users] lipid tail order parameter Ipsita Basu
[gmx-users] Conversion of improper angles from amber object file to gromacs Daniel Bauer
[gmx-users] mdp option periodic molecules Christian Blau
[gmx-users] gmx do_dssp not work for gromacs 2020 or 2020.1 Christian Blau
[gmx-users] gmx do_dssp not work for gromacs 2020 or 2020.1 Christian Blau
[gmx-users] PC turned off after starting minimization Bogdanov, Vladimir
[gmx-users] install and mdrun problems Bogdanov, Vladimir
[gmx-users] install and mdrun problems Bogdanov, Vladimir
[gmx-users] install and mdrun problems Bogdanov, Vladimir
[gmx-users] how to generate average structure from trajectory Subhomoi Borkotoky
[gmx-users] gpu_id for more than 10 GPUs? Leandro Bortot
[gmx-users] Multi-GPU optimization, "DD without halo exchange is not supported" Leandro Bortot
[gmx-users] About membrane leaflets and msd Kevin Boyd
[gmx-users] Regarding REMD using gromacs4.5.5 Daniel Burns
[gmx-users] checkpoint files with replica exchange/ -multidir Daniel Burns
[gmx-users] checkpoint files with replica exchange/ -multidir Daniel Burns
[gmx-users] checkpoint files with replica exchange/ -multidir Daniel Burns
[gmx-users] Replica exchange: Coordinates and simulation box size? Daniel Burns
[gmx-users] Inexpected rmsd Jorden Cabal
[gmx-users] Not all bonded interactions have been properly assigned to the domain decomposition cells Cardenas, Alfredo E
[gmx-users] Drude polarization, practical matters Nicolás Marcelo Rozas Castro
[gmx-users] GROMACS 2019-rc1 install issues Nicolás Marcelo Rozas Castro
[gmx-users] Replicate a structure Devargya Chakraborty
[gmx-users] Replicate a structure Devargya Chakraborty
[gmx-users] query regarding running simulation using GPU Snehasis Chatterjee
[gmx-users] Clarification on the "-surface" and "-output" options of "gmx sasa" ZHANG Cheng
[gmx-users] Extracting information from trajectory Robert Cordina
[gmx-users] Replicate a structure Bratin Kumar Das
[gmx-users] energy minimization in vacuum Bratin Kumar Das
[gmx-users] Regarding parameters for Bromine ion in Charmm36 FF Dilip.H.N
[gmx-users] About peptide mutation with non-standard residue Vicente Domínguez
[gmx-users] compile with intel compiler Lyudmyla Dorosh
[gmx-users] sadaf rani shared "dihedral_angles" with you sadaf rani (via Dropbox)
[gmx-users] Problem in protein ligand interaction Du, Yu
[gmx-users] install and mdrun problems Kunal Dutta
[gmx-users] install and mdrun problems Kunal Dutta
[gmx-users] install and mdrun problems Kunal Dutta
[gmx-users] Script for looping n simulations Neena Susan Eappen
[gmx-users] Linking MYR residue to N-terminus using pdb2gmx Neena Susan Eappen
[gmx-users] No default bond types Neena Susan Eappen
[gmx-users] No default bond types Neena Susan Eappen
[gmx-users] No default bond types Neena Susan Eappen
[gmx-users] No default bond types Neena Susan Eappen
[gmx-users] No default bond types Neena Susan Eappen
[gmx-users] No default bond types Neena Susan Eappen
[gmx-users] geometry optimization of metalloenzyme Nadia Elghobashi-Meinhardt
[gmx-users] gmx rdf (Angular Dependence) Farag, Hossam Mostafa Abdelhamid Mostafa
[gmx-users] (no subject) Afsane Farhadi
[gmx-users] pressure fluctuation and actual density Afsane Farhadi
[gmx-users] potential energy doesn't have negative value Afsane Farhadi
[gmx-users] potential energy doesn't have negative value Afsane Farhadi
[gmx-users] potential energy doesn't have negative value Afsane Farhadi
[gmx-users] positive potential energy Afsane Farhadi
[gmx-users] topology of co2 Afsane Farhadi
[gmx-users] compilation error in multidimarray.h Herbert Fruchtl
[gmx-users] compilation error in multidimarray.h Herbert Fruchtl
[gmx-users] Problem in protein ligand interaction Gonzalez Fernandez, Cristina
[gmx-users] compile with intel compiler Harry Mark Greenblatt
[gmx-users] compile with intel compiler Harry Mark Greenblatt
[gmx-users] 1-4 LJ interactions Andrey Gurtovenko
[gmx-users] Quick and Dirty Installation Error Vinu Harihar
[gmx-users] mdp option periodic molecules Johannes Hermann
[gmx-users] mdp option periodic molecules Johannes Hermann
[gmx-users] alchemical free energy calculation with physical PBC Johannes Hermann
[gmx-users] Replica exchange: Coordinates and simulation box size? Johannes Hermann
[gmx-users] Replica exchange: Coordinates and simulation box size? Johannes Hermann
[gmx-users] Inexpected rmsd Emran Heshmati
[gmx-users] unexpecter rmsd Emran Heshmati
[gmx-users] unexpecter rmsd Emran Heshmati
[gmx-users] 2020.1: comm broken with -update gpu -bonded gpu ? Jochen Hub
[gmx-users] 2020.1: comm broken with -update gpu -bonded gpu ? Jochen Hub
[gmx-users] Force field for urea and urea-TMAO mixture ISHRAT JAHAN
[gmx-users] Force field for urea and urea-TMAO mixture ISHRAT JAHAN
[gmx-users] Fwd: Force field for urea and urea-TMAO mixture ISHRAT JAHAN
[gmx-users] Coupled Gromacs+CP2K QM/MM user survey SINDT Julien
[gmx-users] ERROR 1 [file lig.prm, line 49] - Can I use the the mdp files -> em.mdp followed by em_real.mdp used for Gromacs 5.1.4? Adarsh V. K.
[gmx-users] ERROR 1 [file lig.prm, line 49] - Can I use the the mdp files -> em.mdp followed by em_real.mdp used for Gromacs 5.1.4? Adarsh V. K.
[gmx-users] Fatal error: Too many warnings (3) ; WARNING * [file lig.prm, line **] :: How to overcome this error -> simply delete the lines which give warnings? Adarsh V. K.
[gmx-users] Fatal error: Too many warnings (3) ; WARNING * [file lig.prm, line **] :: How to overcome this error -> simply delete the lines which give warnings? Adarsh V. K.
[gmx-users] ERROR 1 [file lig.itp, line 575]:: ; Duplicate atom index (19) in virtual_sites3 Adarsh V. K.
[gmx-users] ERROR 1 [file lig.itp, line 575]:: ; Duplicate atom index (19) in virtual_sites3 Adarsh V. K.
[gmx-users] install and mdrun problems Kamran Gul, M.Phil. Scholar, Institute of Chemical Sciences, UoP
[gmx-users] Various questions related to Gromacs performance tuning Tobias Klöffel
[gmx-users] Various questions related to Gromacs performance tuning Tobias Klöffel
[gmx-users] GMX 2020 - COMM Removal Issue Daniel Kozuch
[gmx-users] GMX 2020 - COMM Removal Issue Daniel Kozuch
[gmx-users] GMX 2020 - COMM Removal Issue Daniel Kozuch
[gmx-users] GMX 2020 - COMM Removal Issue Daniel Kozuch
[gmx-users] GMX 2020 - COMM Removal Issue Daniel Kozuch
[gmx-users] GMX 2020 - COMM Removal Issue Daniel Kozuch
[gmx-users] GROMACS - tip7p itp and gro files - couldn't find them anywhere Jacek Artur Kozuch
[gmx-users] itp file for TIP7P Jacek Artur Kozuch
[gmx-users] Regarding REMD using gromacs4.5.5 Amit Kumar
[gmx-users] Regarding REMD using gromacs4.5.5 Amit Kumar
[gmx-users] Various questions related to Gromacs performance tuning Kutzner, Carsten
[gmx-users] Various questions related to Gromacs performance tuning Kutzner, Carsten
[gmx-users] (no subject) Sutanu L'Étranger
[gmx-users] How to find and open Gromacs after installation Sutanu L'Étranger
[gmx-users] pdb2gmx command not found Sutanu L'Étranger
[gmx-users] 12 bead mapping of lipid Sahil Lall
[gmx-users] 12 bead mapping of lipid Sahil Lall
[gmx-users] "No atom pairs for dispersion correction" Warning from GROMACS 2020 mdrun Eric Legresley
[gmx-users] grompp error : Atomtype CAro not found Justin Lemkul
[gmx-users] grompp error : Atomtype CAro not found Justin Lemkul
[gmx-users] GMX 2020 - COMM Removal Issue Justin Lemkul
[gmx-users] GMX 2020 - COMM Removal Issue Justin Lemkul
[gmx-users] how to generate average structure from trajectory Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 191, Issue 10 Justin Lemkul
[gmx-users] ERROR 1 [file lig.prm, line 49] - Can I use the the mdp files -> em.mdp followed by em_real.mdp used for Gromacs 5.1.4? Justin Lemkul
[gmx-users] Script for looping n simulations Justin Lemkul
[gmx-users] GROMACS automation Justin Lemkul
[gmx-users] Chlorine atom displacement Justin Lemkul
[gmx-users] Parametrization of Mn(ii) in charmm force field Justin Lemkul
[gmx-users] Linking MYR residue to N-terminus using pdb2gmx Justin Lemkul
[gmx-users] potential energy doesn't have negative value Justin Lemkul
[gmx-users] potential energy doesn't have negative value Justin Lemkul
[gmx-users] Fatal error: Too many warnings (3) ; WARNING * [file lig.prm, line **] :: How to overcome this error -> simply delete the lines which give warnings? Justin Lemkul
[gmx-users] gmx msd unusual unit Justin Lemkul
[gmx-users] pdb2gmx - generating topology for helicase-DNA complex (3PJR) Justin Lemkul
[gmx-users] Gromax NDG/BGLC Force field Error Justin Lemkul
[gmx-users] NDG/BGLC Not Recognised In Force Fields Justin Lemkul
[gmx-users] About gmx msd and membrane leaflets Justin Lemkul
[gmx-users] 2020.1: comm broken with -update gpu -bonded gpu ? Justin Lemkul
[gmx-users] ERROR 1 [file lig.itp, line 575]:: ; Duplicate atom index (19) in virtual_sites3 Justin Lemkul
[gmx-users] Replica exchange: Coordinates and simulation box size? Justin Lemkul
[gmx-users] Parrinello-Rahman and Pairtype1 causing pressure instabilities Justin Lemkul
[gmx-users] Conversion of improper angles from amber object file to gromacs Justin Lemkul
[gmx-users] Extracting temperature of specific groups during the simulations Justin Lemkul
[gmx-users] Extracting temperature of specific groups during the simulations Justin Lemkul
[gmx-users] How to reduce the penalty of small molecule from CGenFF Justin Lemkul
[gmx-users] gpu_id for more than 10 GPUs? Justin Lemkul
[gmx-users] No default bond types Justin Lemkul
[gmx-users] No default bond types Justin Lemkul
[gmx-users] No default bond types Justin Lemkul
[gmx-users] No default bond types Justin Lemkul
[gmx-users] unexpecter rmsd Justin Lemkul
[gmx-users] Minimize energy of protein in CCl4 Yang Li
[gmx-users] gmx do_dssp not work for gromacs 2020 or 2020.1 yujie Liu
[gmx-users] 2020.1: comm broken with -update gpu -bonded gpu ? Magnus Lundborg
[gmx-users] comm-grps Magnus Lundborg
[gmx-users] 12 bead mapping of lipid Dave M
[gmx-users] interpolating frames between extremes Dave M
[gmx-users] Regarding REMD using gromacs4.5.5 Mohammad Madani
[gmx-users] Ellipticity 222 - negative values? Anh Mai
[gmx-users] Force field for urea and urea-TMAO mixture Erik Marklund
[gmx-users] SARS-CoV-2 main protease with ligand from acpype, but converting to vsites? Erik Marklund
[gmx-users] Request for Plumed sample scripts Peter Mawanga
[gmx-users] Amber14SB Eduardo Mayo
[gmx-users] gromacs.org_gmx-users Digest, Vol 191, Issue 10 Eduardo Mayo
[gmx-users] Gromax NDG/BGLC Force field Error McDonnell, Thomas
[gmx-users] gromacs.org_gmx-users Digest, Vol 191, Issue 42 McDonnell, Thomas
[gmx-users] NDG/BGLC Not Recognised In Force Fields McDonnell, Thomas
[gmx-users] Different force constants for different umbrella windows? Andreas Mecklenfeld
[gmx-users] Troubleshooting Generic Floating Point Exception Errors Travis Meyer
[gmx-users] Parrinello-Rahman and Pairtype1 causing pressure instabilities Wesley Michaels
[gmx-users] Parrinello-Rahman and Pairtype1 causing pressure instabilities Wesley Michaels
[gmx-users] Parrinello-Rahman and Pairtype1 causing pressure instabilities Wesley Michaels
[gmx-users] Fwd: Reproducibility of a PMF plot André Farias de Moura
[gmx-users] Fwd: Problems with Non-equilibrium MD Benson Muite
[gmx-users] How to find and open Gromacs after installation Benson Muite
[gmx-users] Various questions related to Gromacs performance tuning Benson Muite
[gmx-users] replica exchange simulations performance issues. Benson Muite
[gmx-users] (no subject) FAISAL NABI
[gmx-users] Lincs warning in free energy calculation FAISAL NABI
[gmx-users] Non-linear slowdown in grompp with very many bonded interactions Chris Neale
[gmx-users] pdb2gmx command not found Chris Neale
[gmx-users] About peptide mutation with non-standard residue Chris Neale
[gmx-users] Error in free energy calculation Chris Neale
[gmx-users] Gromacs 2020 fails to run adh_cubic_vsites Rolly Ng
[gmx-users] Gromacs 2020 fails to run adh_cubic_vsites Rolly Ng
[gmx-users] 回复: Gromacs 2020 fails to run adh_cubic_vsites Rolly Ng
[gmx-users] How to reduce the penalty of small molecule from CGenFF Rolly Ng
[gmx-users] compile with intel compiler Rolly Ng
[gmx-users] How to reduce the penalty of small molecule from CGenFF Rolly Ng
[gmx-users] Onsager coefficient Sina Omrani
[gmx-users] Onsager coefficient Sina Omrani
[gmx-users] Onsager coefficient Sina Omrani
[gmx-users] Onsager coefficient Sina Omrani
[gmx-users] MMGBSA for GROMACS Anwesh Pandey
[gmx-users] ERROR 1 [file lig.prm, line 49] - Can I use the the mdp files -> em.mdp followed by em_real.mdp used for Gromacs 5.1.4? Sotirios Dionysios I. Papadatos
[gmx-users] gmx msd unusual unit Joe Paul-Taylor
[gmx-users] gmx msd unusual unit Joe Paul-Taylor
[gmx-users] grompp error : Atomtype CAro not found Atila Petrosian
[gmx-users] grompp error : Atomtype CAro not found Atila Petrosian
[gmx-users] grompp error : Atomtype CAro not found Atila Petrosian
[gmx-users] slurm and gromacs Atila Petrosian
[gmx-users] Calculate dihedrals Marko Petrovic
[gmx-users] Can you help regarding this Prasanth G, Research Scholar
[gmx-users] no subject Prasanth G, Research Scholar
[gmx-users] Performance issues with Gromacs 2020 on GPUs - slower than 2019.5 Szilárd Páll
[gmx-users] Performance issues with Gromacs 2020 on GPUs - slower than 2019.5 Szilárd Páll
[gmx-users] [gmx-developers] The setup of gpu_id has a bug? Szilárd Páll
[gmx-users] replica exchange simulations performance issues. Szilárd Páll
[gmx-users] replica exchange simulations performance issues. Szilárd Páll
[gmx-users] Nose-Hoover vs Berendsen vs V-rescale Hadi Rahmaninejad
[gmx-users] regarding dihedral restraints Sadaf Rani
[gmx-users] Fwd: regarding dihedral restraints Sadaf Rani
[gmx-users] how to generate average structure from trajectory Sadaf Rani
[gmx-users] how to generate average structure from trajectory Sadaf Rani
[gmx-users] Negative Pressure during equilibration Sadaf Rani
[gmx-users] makes sense for Ryckaert Bellemans dihs. only. Sadaf Rani
[gmx-users] Error in free energy calculation Sadaf Rani
[gmx-users] Error in free energy calculation (Chris Neale) Sadaf Rani
[gmx-users] Lincs warning in free energy calculation Sadaf Rani
[gmx-users] no atom pairs for dispersion correction Sadaf Rani
[gmx-users] Can you help regarding this Kushal Roy
[gmx-users] Chlorine atom displacement Samantha Rudinsky
[gmx-users] Gmx bundle regarding RAHUL SURESH
[gmx-users] PEG from ATB: No residues in chain Schirra, Simone
[gmx-users] PEG from ATB: No residues in chain Schirra, Simone
[gmx-users] GROMACS Quick and Dirty Installation Error Schulz, Roland
[gmx-users] compile with intel compiler Schulz, Roland
[gmx-users] compile with intel compiler Schulz, Roland
[gmx-users] Vacuum simulations with Gromacs 2018 Aishwary Shivgan
[gmx-users] Per atom energies Guilherme Carneiro Queiroz da Silva
[gmx-users] Regarding sg parameter Omkar Singh
[gmx-users] Odd temperature spikes during T-REMD? Smith, Micholas D.
[gmx-users] MMGBSA for GROMACS Borkotoky Speaks
[gmx-users] Gromacs 2020 fails to run adh_cubic_vsites David van der Spoel
[gmx-users] Troubleshooting Generic Floating Point Exception Errors David van der Spoel
[gmx-users] Setting a electric field in a simulation David van der Spoel
[gmx-users] potential energy doesn't have negative value David van der Spoel
[gmx-users] positive potential energy David van der Spoel
[gmx-users] gmx msd unusual unit David van der Spoel
[gmx-users] Per atom energies David van der Spoel
[gmx-users] Thin film drifting David van der Spoel
[gmx-users] Thin film drifting David van der Spoel
[gmx-users] Thin film drifting David van der Spoel
[gmx-users] Thin film drifting David van der Spoel
[gmx-users] Onsager coefficient David van der Spoel
[gmx-users] Onsager coefficient David van der Spoel
[gmx-users] Onsager coefficient David van der Spoel
[gmx-users] Onsager coefficient David van der Spoel
[gmx-users] Regarding use of harmonic wall model Shashank Ranjan Srivastava
[gmx-users] lipid tail order parameter Piggot T.
[gmx-users] Gromacs 2020 Turega, Simon
[gmx-users] install and mdrun problems Timofey Tyugashev
[gmx-users] Gromacs Install problem Alexander Tzanov
[gmx-users] Gromacs Install problem Alexander Tzanov
[gmx-users] regard emails on unsubscription from the gromacs.org_gmx-users mailing list Alessandra Villa
[gmx-users] PEG from ATB: No residues in chain Alessandra Villa
[gmx-users] Force field for urea and urea-TMAO mixture Alessandra Villa
[gmx-users] Amber14SB Alessandra Villa
[gmx-users] Clarification on the "-surface" and "-output" options of "gmx sasa" Alessandra Villa
[gmx-users] NVT.mdp running in 4.6 version but failed in VERSION 5.1.2 Alessandra Villa
[gmx-users] Parametrization of Mn(ii) in charmm force field Alessandra Villa
[gmx-users] Parametrization of Mn(ii) in charmm force field Alessandra Villa
[gmx-users] makes sense for Ryckaert Bellemans dihs. only. Alessandra Villa
[gmx-users] makes sense for Ryckaert Bellemans dihs. only. Alessandra Villa
[gmx-users] About gmx msd and membrane leaflets Alessandra Villa
[gmx-users] alchemical free energy calculation with physical PBC Alessandra Villa
[gmx-users] Parrinello-Rahman and Pairtype1 causing pressure instabilities Alessandra Villa
[gmx-users] Extracting temperature of specific groups during the simulations Alessandra Villa
[gmx-users] Extracting temperature of specific groups during the simulations Alessandra Villa
[gmx-users] No default bond types Alessandra Villa
[gmx-users] Calculate dihedrals Alessandra Villa
[gmx-users] Energy values for 1 step NVT/NVE simulation of 100 water molecules Anh Vo
[gmx-users] k-space settings in GROMACS Anh Vo
[gmx-users] k-space settings in GROMACS Anh Vo
[gmx-users] k-space settings in GROMACS Anh Vo
[gmx-users] distance restraints between different chains Quyen V. Vu
[gmx-users] Collision Dallas Warren
[gmx-users] grompp error : Atomtype CAro not found Dallas Warren
[gmx-users] install and mdrun problems Dallas Warren
[gmx-users] grompp error : Atomtype CAro not found Dallas Warren
[gmx-users] core dump Dallas Warren
[gmx-users] pressure fluctuation and actual density Dallas Warren
[gmx-users] Creating a simple water box Dallas Warren
[gmx-users] Can you help regarding this Dallas Warren
[gmx-users] (no subject) Dallas Warren
[gmx-users] pdb2gmx command not found Dallas Warren
[gmx-users] Onsager coefficient Dallas Warren
[gmx-users] SARS-CoV-2 main protease with ligand from acpype, but converting to vsites? Bjorn Wesen
[gmx-users] Could you help me deal with GC-AdResS approach implemented in Gromacs? John Whittaker
[gmx-users] Replicate a structure John Whittaker
[gmx-users] Replicate a structure John Whittaker
[gmx-users] GROMACS automation John Whittaker
[gmx-users] slurm and gromacs John Whittaker
[gmx-users] GROMACS automation John Whittaker
[gmx-users] GROMACS automation John Whittaker
[gmx-users] Linking MYR residue to N-terminus using pdb2gmx Billy Williams-Noonan
[gmx-users] pdb2gmx - generating topology for helicase-DNA complex (3PJR) Max Winokan
[gmx-users] gmx hbond -life HaoLun Wu
[gmx-users] how to add c-terminal to the coarse-grained structure Rabeta Yeasmin
[gmx-users] 12 bead mapping of lipid Rabeta Yeasmin
[gmx-users] 12 bead mapping of lipid Rabeta Yeasmin
[gmx-users] 12 bead mapping of lipid Rabeta Yeasmin
[gmx-users] About membrane leaflets and msd Poncho Arvayo Zatarain
[gmx-users] About gmx msd and membrane leaflets Poncho Arvayo Zatarain
[gmx-users] Gromacs Install problem xuan Zhang
[gmx-users] Gromacs Install problem xuan Zhang
[gmx-users] Free energy change calculation Xiaotong Zhang
[gmx-users] Fwd: Problems with Non-equilibrium MD Jun Zhou
[gmx-users] Problems with Non-equilibrium MD Jun Zhou
[gmx-users] Viscosity of non-newtonian fluid Jun Zhou
[gmx-users] install and mdrun problems Paul bauer
[gmx-users] GROMACS 2020.1 patch release available Paul bauer
[gmx-users] GMX 2020 - COMM Removal Issue Paul bauer
[gmx-users] Gromacs Install problem Paul bauer
[gmx-users] 2020.1: comm broken with -update gpu -bonded gpu ? Paul bauer
[gmx-users] GROMACS has switched to use Gitlab Paul bauer
[gmx-users] Inexpected rmsd Paul bauer
[gmx-users] GROMACS 2019-rc1 install issues Paul bauer
[gmx-users] GROMACS 2019-rc1 install issues Paul bauer
[gmx-users] SARS-CoV-2 main protease with ligand from acpype, but converting to vsites? blau
[gmx-users] SARS-CoV-2 main protease with ligand from acpype, but converting to vsites? blau
[gmx-users] Water molecules fill in gaps in protein Dawid das
[gmx-users] Creating a simple water box dodia
[gmx-users] PEG from ATB: No residues in chain soumadwip ghosh
[gmx-users] gmx do_dssp not work for gromacs 2020 or 2020.1 liuyujie714
[gmx-users] gmx do_dssp not work for gromacs 2020 or 2020.1 liuyujie714
[gmx-users] gmx do_dssp not work for gromacs 2020 or 2020.1 liuyujie714 at gmail.com
[gmx-users] gmx do_dssp not work for gromacs 2020 or 2020.1 liuyujie714 at gmail.com
[gmx-users] Could you help me deal with GC-AdResS approach implemented in Gromacs? Екатерина Одинцова

Last message date: Tue Mar 31 18:59:51 CEST 2020
Archived on: Tue Mar 31 18:59:52 CEST 2020

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