[gmx-users] GROMACS automation

John Whittaker johnwhittake at zedat.fu-berlin.de
Wed Mar 11 14:42:45 CET 2020


Write a script that calls gmx insert-molecules 3000 times and uses the
previous output as input for each call.

http://manual.gromacs.org/documentation/current/onlinehelp/gmx-insert-molecules.html

Is there something you have to do in between each insertion?

- John

> Hello everybody,
>
> I am trying to insert molecules into a box but I have to insert one single
> molecule at a time reaching 3000 molecule in total. Is there a way to
> automate this process ?
>
> Thanks
> Mohamed
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