[gmx-users] Gromacs Install problem

[Paul bauer]

Hello,

if you have found a bug in the multi-dimensional array please report it 
on redmine.gromacs.org so we can fix it, together with the build 
configuration that causes it.

Cheers

Paul

On 14/03/2020 00:51, Alexander Tzanov wrote:
> The new version from March 2020.1 is buggy. Try version 2020. There is another bug in multidimensional array ...
>
> Alex
>
> On Mar 13, 2020 1:54 PM, xuan Zhang <zhangxuan7788 at gmail.com> wrote:
> Hi,
>
> When I install the Gromacs on Linux, the cmake occurs error like below. I
> am a newer on this software. I appreciate very much that you can help me.
>
> Best regards,
> Xuan
>
> **********/gromacs-2020.1/build$ cmake .. -DGMX_BUILD_OWN_FFTW=ON
> -DREGRESSIONTEST_DOWNLOAD=ON
> CMake Error at cmake/FindLibStdCpp.cmake:162 (message):
>    GROMACS requires C++14, but a test of such functionality in the C++
>    standard library failed to compile.  The g++ found at /usr/bin/g++ had a
>    suitable version, so ;something else must be the problem
> Call Stack (most recent call first):
>    CMakeLists.txt:69 (find_package)
>
>
> -- Configuring incomplete, errors occurred!
> See also "/data16/XUAN/gromacs-2020.1/build/CMakeFiles/CMakeOutput.log".
> See also "/data16/XUAN/gromacs-2020.1/build/CMakeFiles/CMakeError.log".
>
>
> *#cmakeerror.log as below:*
>
> Performing C++ SOURCE FILE Test CXX14_COMPILES failed with the following
> output:
> Change Dir: /data16/XUAN/gromacs-2020.1/build/CMakeFiles/CMakeTmp
>
> Run Build Command(s):/usr/bin/make cmTC_203a2/fast && /usr/bin/make -f
> CMakeFiles/cmTC_203a2.dir/build.make CMakeFiles/cmTC_203a2.dir/build
> make[1]: Entering directory
> '/data16/XUAN/gromacs-2020.1/build/CMakeFiles/CMakeTmp'
> Building CXX object CMakeFiles/cmTC_203a2.dir/src.cxx.o
> /sw/workstations/apps/linux-ubuntu16.04-x86_64/openmpi/3.1.1/intel-18.0.1/lqdls6jj3oauixvl4rbbpnljxr6sd6zs/bin/mpic++
>    -gcc-name=/usr/bin/g++ -DCXX14_COMPILES   -std=c++14 -o
> CMakeFiles/cmTC_203a2.dir/src.cxx.o -c
> /data16/XUAN/gromacs-2020.1/build/CMakeFiles/CMakeTmp/src.cxx
> /data16/XUAN/gromacs-2020.1/build/CMakeFiles/CMakeTmp/src.cxx(2): error:
> namespace "std" has no member "cbegin"
>    int main() { int a[2]; std::cbegin(a); }
>                                ^
>
> compilation aborted for
> /data16/XUAN/gromacs-2020.1/build/CMakeFiles/CMakeTmp/src.cxx (code 2)
> CMakeFiles/cmTC_203a2.dir/build.make:82: recipe for target
> 'CMakeFiles/cmTC_203a2.dir/src.cxx.o' failed
> make[1]: *** [CMakeFiles/cmTC_203a2.dir/src.cxx.o] Error 2
> make[1]: Leaving directory
> '/data16/XUAN/gromacs-2020.1/build/CMakeFiles/CMakeTmp'
> Makefile:138: recipe for target 'cmTC_203a2/fast' failed
> make: *** [cmTC_203a2/fast] Error 2
>
>
> Source file was:
> #include <iterator>
> int main() { int a[2]; std::cbegin(a); }
>
> --
> *Xuan Zhang*
>
> PhD  Candidate
> China University of Petroleum(East China)
> School of Petroleum Engineering
> No.66 Changjiang West Road, Qingdao
>
>
> Visiting scholar (2017.12-2018.12)
> The University of Texas at Austin
> Cockrell School of Engineering
> McKetta Department of Chemical Engineering
> 200 E Dean Keeton St. Stop C0400
> CPE 5.428
>
> *(+86) 15563945098 <(571)%20346-9770>* | zhangxuan7788 at gmail.com
> --
> Gromacs Users mailing list
>
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.


-- 
Paul Bauer, PhD
GROMACS Development Manager
KTH Stockholm, SciLifeLab
0046737308594