[gmx-users] Extraction of frames at different interval

Farida Aziz faridaaziz90 at yahoo.com
Tue Mar 17 19:39:18 CET 2020


 Hey, To extract the first frame (t = 0 ns) of the trajectory i have used the below command 
gmx trjconv -s md_0_10.tpr -f md_0_10_center.xtc -o start.pdb -dump 0
 to extract the frames at 6000 ps, 8600 ps and 9500 ps the following command i adjust like below, are these ok?
gmx trjconv -s md_0_10.tpr -f md_0_10_center.xtc -o start1.pdb -dump 6000

gmx trjconv -s md_0_10.tpr -f md_0_10_center.xtc -o start.2pdb -dump 8600

gmx trjconv -s md_0_10.tpr -f md_0_10_center.xtc -o start3.pdb -dump 9500


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