[gmx-users] disulfide bridges

[Miro Astore]

Hi all,

I'm trying to make a protein with a fair few disulfide bridges and I
couldn't get it to work. I chose -ss yes and increased the minimum distance
in specbonds.dat but it doesn't seem to want to let me see all possible
pariings.

Any way I can nudge it in the right direction without performing a
minimisation with restraints?

Best, Miro

-- 
Miro A. Astore   (he/him)
PhD Candidate | Computational Biophysics
Office 434 A28 School of Physics
University of Sydney