[gmx-developers] dummy atoms

[Erik Lindahl]

Frank Wennmohs wrote:

>Hello all!
>
>Is it possible that there are some restrictions
>as to where dummy atoms can be placed in
>a molecule's topology?
>  
>
No, they can be placed anywhere, but if you want to run in parallel the 
dummy and constructing atoms have to be on the same or neighboring 
nodes, so in that case they shouldn't be too far away from each other in 
the topology.

Cheers,

Erik