[gmx-developers] Gromacs source-code integrate with Eclipse IDE - Help

[Roland Schulz]

HI,

no you don't need Bioclipse. I'm not sure how to use egit yet. It seems that
a Eclipse project file has to be on the git server for it to work. Currently
there is none.

@all: Does anyone object for me to add a Eclipse project file to the source?
It shouldn't affect anyone not using eclipse.

I use the command line git to download Gromacs and then import it afterwards
into Eclipse. Just do this by
File->New->C Project->Makefile project->Empty Project->Linux Gcc Toolchain
And just select the folder where you downloaded the code from with git.

To compile:
First set the compile environment up as usual on the console (e.g.
./bootstrap, ./configure).   (I don't think you can do this within eclipse -
let me know if you know how to do it)
Then create a build target to build what you want (e.g. all or mdrun).

Let me know if you need more detailed steps.

Roland


On Thu, Jan 14, 2010 at 10:14 AM, Rodrigo faccioli <
rodrigo_faccioli at uol.com.br> wrote:

> Hi all,
>
> I've tried to integrate Eclipse IDE and Gromacs source-code because I've
> worked with Eclipse in my Python and Java programs. Unfortunately, I can't
> do it works fine. I want to do it because I've studied the Gromacs
> source-code and now the time to use it in my PhD project came.
>
> My steps to try realized it was:
>
>    1. Import C++ project where I chose the Git Repository Option.
>    2. I put the link git://git.gromacs.org/gromacs.git which I obtained
>    from Gromacs website at
>    http://www.gromacs.org/Developer_Zone/Git/Basic_Git_Usage
>    3. I check the option: Import project after clone.
>
> I get the Gromacs source-code from Git. However, I can't import Gromacs
> files in my Eclipse project . I tried to run bootstrap command which did not
> work too.
>
> I searched about it on web and I found the Bioclipse project which tells
> about Eclipse and Gromacs work together. However, I did not find
> documentation about it enough. So, my question is: I need to install the
> Bioclipse or is there other way?
>
> I appreciate any help.
>
> Thanks in advance.
>
> --
> Rodrigo Antonio Faccioli
> Ph.D Student in Electrical Engineering
> University of Sao Paulo - USP
> Engineering School of Sao Carlos - EESC
> Department of Electrical Engineering - SEL
> Intelligent System in Structure Bioinformatics
> http://laips.sel.eesc.usp.br
> Phone: 55 (16) 3373-9366 Ext 229
> Curriculum Lattes - http://lattes.cnpq.br/1025157978990218
>
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