[gmx-developers] Gromacs source-code integrate with Eclipse IDE - Help

[Roland Schulz]

Hi,

there is one alternative I forgot to mention.

Download git with some other tool (e.g. commandline) as before.

Then use cmake to generate an eclipse project file (don't create a separate
build directory but use the source as build directory). And then import that
project file into eclipse.

Then you don't need to generate a project in eclipse and you don't need to
generate the make targets. Only disadvantage the use of cmake is not yet
documented.
Also I don't know how to combine cmake with egit.

Roland

On Thu, Jan 14, 2010 at 10:42 AM, Roland Schulz <roland at utk.edu> wrote:

> HI,
>
> no you don't need Bioclipse. I'm not sure how to use egit yet. It seems
> that a Eclipse project file has to be on the git server for it to work.
> Currently there is none.
>
> @all: Does anyone object for me to add a Eclipse project file to the
> source? It shouldn't affect anyone not using eclipse.
>
> I use the command line git to download Gromacs and then import it
> afterwards into Eclipse. Just do this by
> File->New->C Project->Makefile project->Empty Project->Linux Gcc Toolchain
> And just select the folder where you downloaded the code from with git.
>
> To compile:
> First set the compile environment up as usual on the console (e.g.
> ./bootstrap, ./configure).   (I don't think you can do this within eclipse -
> let me know if you know how to do it)
> Then create a build target to build what you want (e.g. all or mdrun).
>
> Let me know if you need more detailed steps.
>
> Roland
>
>
> On Thu, Jan 14, 2010 at 10:14 AM, Rodrigo faccioli <
> rodrigo_faccioli at uol.com.br> wrote:
>
>> Hi all,
>>
>> I've tried to integrate Eclipse IDE and Gromacs source-code because I've
>> worked with Eclipse in my Python and Java programs. Unfortunately, I can't
>> do it works fine. I want to do it because I've studied the Gromacs
>> source-code and now the time to use it in my PhD project came.
>>
>> My steps to try realized it was:
>>
>>    1. Import C++ project where I chose the Git Repository Option.
>>    2. I put the link git://git.gromacs.org/gromacs.git which I obtained
>>    from Gromacs website at
>>    http://www.gromacs.org/Developer_Zone/Git/Basic_Git_Usage
>>    3. I check the option: Import project after clone.
>>
>> I get the Gromacs source-code from Git. However, I can't import Gromacs
>> files in my Eclipse project . I tried to run bootstrap command which did not
>> work too.
>>
>> I searched about it on web and I found the Bioclipse project which tells
>> about Eclipse and Gromacs work together. However, I did not find
>> documentation about it enough. So, my question is: I need to install the
>> Bioclipse or is there other way?
>>
>> I appreciate any help.
>>
>> Thanks in advance.
>>
>> --
>> Rodrigo Antonio Faccioli
>> Ph.D Student in Electrical Engineering
>> University of Sao Paulo - USP
>> Engineering School of Sao Carlos - EESC
>> Department of Electrical Engineering - SEL
>> Intelligent System in Structure Bioinformatics
>> http://laips.sel.eesc.usp.br
>> Phone: 55 (16) 3373-9366 Ext 229
>> Curriculum Lattes - http://lattes.cnpq.br/1025157978990218
>>
>> --
>> gmx-developers mailing list
>> gmx-developers at gromacs.org
>> http://lists.gromacs.org/mailman/listinfo/gmx-developers
>> Please don't post (un)subscribe requests to the list. Use the
>> www interface or send it to gmx-developers-request at gromacs.org.
>>
>
>
>
> --
> ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
> 865-241-1537, ORNL PO BOX 2008 MS6309
>



-- 
ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
865-241-1537, ORNL PO BOX 2008 MS6309
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-developers/attachments/20100114/efb7f872/attachment.html>