[gmx-users] protein jumps 10nm south in the ~20000th frame

Paul Barrett barrett at biop.ox.ac.uk
Fri Apr 11 13:05:01 CEST 2003


aha! sounds perfect.

Thankyou both

Paul

>Paul Barrett wrote:
>> 
>> thanks david
>> 
>> yes (as I wrote) the jump is about the size of my box (9nm).
>> 
>> looks like I have to just live with it for my visualisation.
>> 
>
>or use:
>trjconv -pbc nojump 
>
>prior to visualisation
>
>--
>
>Bert
>
>____________________________________________________________________________
>Dr. Bert de Groot
>
>Max Planck Institute for Biophysical Chemistry
>Theoretical molecular biophysics group
>Am Fassberg 11 
>37077 Goettingen, Germany
>
>tel: +49-551-2011306, fax: +49-551-2011089
>
>email: bgroot at gwdg.de
>http://www.mpibpc.gwdg.de/abteilungen/071/bgroot
>____________________________________________________________________________
>_______________________________________________
>gmx-users mailing list
>gmx-users at gromacs.org
>http://www.gromacs.org/mailman/listinfo/gmx-users
>Please don't post (un)subscribe requests to the list. Use the 
>www interface or send it to gmx-users-request at gromacs.org.
>--------------------------------------------------------------------------------
>Return-Path: <gmx-users-admin at gromacs.org>
>Received: from oxmail.ox.ac.uk by nutmeg.biop.ox.ac.uk (MX V4.2 AXP) with SMTP;
>          Fri, 11 Apr 2003 11:52:57 +0100
>Received: from hawk.theophys.kth.se ([130.237.25.19]) by oxmail.ox.ac.uk with
>          smtp (Exim 4.14) id 193w9R-0005XA-EG for barrett at biop.ox.ac.uk; Fri,
>          11 Apr 2003 11:52:57 +0100
>Received: (qmail 17822 invoked from network); 11 Apr 2003 10:53:01 -0000
>Received: from localhost (HELO hawk.theophys.kth.se) (127.0.0.1) by 0 with
>          SMTP; 11 Apr 2003 10:53:01 -0000
>Received: (qmail 17788 invoked from network); 11 Apr 2003 10:52:36 -0000
>Received: from hanna.mpibpc.gwdg.de (HELO mpibpc.mpg.de) (134.76.210.222) by 0
>          with SMTP; 11 Apr 2003 10:52:36 -0000
>Received: from CONVERSION-DAEMON.burga-fddi.mpibpc.gwdg.de by
>          burga-fddi.mpibpc.gwdg.de (PMDF V6.1 #30520) id
>          <01KULOEE7IHC8X0MSB at burga-fddi.mpibpc.gwdg.de> for
>          gmx-users at gromacs.org; Fri, 11 Apr 2003 12:52:14 +0200
>Received: from gwdg.de ([134.76.212.149]) by burga-fddi.mpibpc.gwdg.de (PMDF
>          V6.1 #30520) with ESMTP id
>          <01KULOEDRW7S8X0I1R at burga-fddi.mpibpc.gwdg.de> for
>          gmx-users at gromacs.org; Fri, 11 Apr 2003 12:52:06 +0200
>Message-ID: <3E969E56.47AB78D2 at gwdg.de>



More information about the gromacs.org_gmx-users mailing list