[gmx-users] duplicate the lipid bilayer
yhsong at ccb.wustl.edu
Mon Oct 27 21:51:01 CET 2003
Thanks for your kind response. After I get 256 DPPC bilayer, if I only want
to simulate a system of 200DPPC, could I also use editconf to modify the
system to get a 200DPPC bilayer? If it can, how I can realize it?
Thank you very much,
> editconf -center will do it.
> Center the first bilayer with -center 0 0 0, then the second patch with
> e.g. -center 0 box_y 0, the third with -center box_x 0 0, the fourth
> with -center box_x box_y 0 and the cat the pdb-files together...
> Yuhua Song wrote:
> >I dowload 64 DPPC lipid bilayer from Peter Teileman's website. I intend
> >have a ~200 DPPC or 256DPPC bilayer. In the mailing list dated on July
> >2003, titled "bilayers with genconf", it mentions that after geting a
> >leaflet of 64 lipids, rotate and translate that leaflet to make the other
> >leaflet (editconf). But when I try using editconf to translate the 64
> >lipid bilayer along x, y direction to try to get the duplicated 256 DPPC
> >bilayer, I did not make it work. First no translation option in
> >Does someone has the better way to duplicate the lipid bilaye to get the
> >bigger DPPC lipid bilayer?
> >Thank you very much.
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> >gmx-users at gromacs.org
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> Dr. Rainer Boeckmann
> Computational Structural Biology - Biochemistry Department
> University of Zuerich
> Winterthurerstrasse 190
> CH-8057 Zuerich, Switzerland
> tel: ++41-(0)1-63-555-93 - fax: ++41-(0)1-63-568-62
> email: rainer at bioc.unizh.ch
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