[gmx-users] DPPC bilayer simulation

Dallas Warren dallas.warren at vcp.monash.edu.au
Thu Aug 12 01:57:20 CEST 2004

>Can somebody please help me out by giving pointers
>with the following steps?
>1. Set up a DPPC bilayer surrounded with water (in a
>periodic box)
>2. Perform an equilibration on the DPPC bilayer
>3. Insert a protein in DPPC bilayer
>4. Equilibrate the DPPC bilayer + protein

Haven't done that myself, other than forming some various other types of 
bilayers, however there have been quite a lot of discussions on this 
emailing list about it.  And there have been a lot of pointers given on the 
various steps involved, problems encountered etc.  So might be worth using 
the search engine on the GROMACS home page and reading up there first.

Catch ya,

Dr. Dallas Warren
Research Fellow
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9083
When the only tool you own is a hammer, every problem begins to resemble a nail.

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