[gmx-users] g_cluster: fit & rmsd groups

Nuno R. L. Ferreira nunolf at ci.uc.pt
Fri Jul 2 13:00:51 CEST 2004

Hi all

Just to be sure about it ...

It seems that g_cluster uses the same atom group for fitting and performing 
the rmsd calculations.

What about if I want to fit the structures to a different group than the one 
used to calculate the rmsd's?  I see a -dm flag in the command options, able 
to read a xpm file. 

This xpm file , could be produced by g_rmsdist?

Best regards,

Nuno Ricardo Santos Loureiro da Silva Ferreira
Grupo de Química Biológica 
Departamento Química
Universidade de Coimbra
"Do not worry about your difficulties in maths.
 I can assure you that mine are still greater."

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