[gmx-users] g_cluster: fit & rmsd groups

[Nuno R. L. Ferreira]

On Friday 02 July 2004 12:00 pm, Nuno R. L. Ferreira wrote:
> Hi all
>
> Just to be sure about it ...
>
> It seems that g_cluster uses the same atom group for fitting and performing
> the rmsd calculations.
>
> What about if I want to fit the structures to a different group than the
> one used to calculate the rmsd's?  I see a -dm flag in the command options,
> able to read a xpm file.
>
> This xpm file , could be produced by g_rmsdist?

Perhaps with g_rms -m?

>
> Best regards,
> Nuno

-- 
**********************************************
Nuno Ricardo Santos Loureiro da Silva Ferreira
Grupo de Química Biológica 
Departamento Química
Universidade de Coimbra
Portugal
www.biolchem.qui.uc.pt
**********************************************
"Do not worry about your difficulties in maths.
 I can assure you that mine are still greater."
                                   emc2