[gmx-users] g_cluster: fit & rmsd groups

Nuno R. L. Ferreira nunolf at ci.uc.pt
Fri Jul 2 13:07:44 CEST 2004

On Friday 02 July 2004 12:00 pm, Nuno R. L. Ferreira wrote:
> Hi all
> Just to be sure about it ...
> It seems that g_cluster uses the same atom group for fitting and performing
> the rmsd calculations.
> What about if I want to fit the structures to a different group than the
> one used to calculate the rmsd's?  I see a -dm flag in the command options,
> able to read a xpm file.
> This xpm file , could be produced by g_rmsdist?

Perhaps with g_rms -m?

> Best regards,
> Nuno

Nuno Ricardo Santos Loureiro da Silva Ferreira
Grupo de Química Biológica 
Departamento Química
Universidade de Coimbra
"Do not worry about your difficulties in maths.
 I can assure you that mine are still greater."

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