[gmx-users] cannot compile

David spoel at xray.bmc.uu.se
Sat Jul 10 09:14:57 CEST 2004


On Fri, 2004-07-09 at 23:10, tenghl wrote:
> Dear all,
> 
> I'm trying to compile the gromacs on HP-UX, but when I type make, I
> allways get the error message:
>  
> Making all in kernel
>         /bin/sh ../../libtool --mode=link gcc    
> -L/w/jschen.01/grad/hailong/fftw/lib  -o grompp  topio.o toppush.o
> topcat.o  topshake.o convparm.o tomorse.o  sorting.o splitter.o
> dum_parm.o  readir.o add_par.o topexcl.o  toputil.o topdirs.o grompp.o
> ../mdlib/libmd.la ../gmxlib/libgmx.la  -L/usr/local/X11/lib -lnsl
> -lrfftw -lfftw -lm  -lXm -lXt  -lXext -lX11   
> gcc -o grompp topio.o toppush.o topcat.o topshake.o convparm.o
> tomorse.o sorting.o splitter.o dum_parm.o readir.o add_par.o topexcl.o
> toputil.o topdirs.o grompp.o  -L/w/jschen.01/grad/hailong/fftw/lib
> ../mdlib/.libs/libmd.a -L/usr/local/X11/lib ../gmxlib/.libs/libgmx.a
> -lnsl /space/fftw/lib/librfftw.a /space/fftw/lib/libfftw.a -lm -lXm
> -lXt -lXext -lX11
> /usr/ccs/bin/ld: Unsatisfied symbols:
>    XtOpenApplication (first referenced in
> ../gmxlib/.libs/libgmx.a(calcgrid.o)) (code)
> collect2: ld returned 1 exit status

Looks like a Motif call, turn off Motif at the configure stage:
./configure --without-motif-includes
(or something like that, check using the -help flag)

> *** Error exit code 1
>  
> Stop.
> *** Error exit code 1
>  
> Stop.
> *** Error exit code 1
>  
> Stop.
> *** Error exit code 1
>  
> Stop.
> 
>  
> Have no idea what else to do.
>  
> Thanks,
>  
> Hailong
> 
>  
> thanks in advance,
> 
> 
> 
> ______________________________________________________________________
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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