[gmx-users] cannot compile

tenghl hailong at seas.ucla.edu
Sat Jul 10 19:02:00 CEST 2004


Dear David

Thank you very much for your advice. I can install gromacs on my workstation now!

Hailong

*********** REPLY SEPARATOR  ***********

On 7/10/2004 at 9:14 AM David wrote:

>On Fri, 2004-07-09 at 23:10, tenghl wrote:
>> Dear all,
>> 
>> I'm trying to compile the gromacs on HP-UX, but when I type make, I
>> allways get the error message:
>>  
>> Making all in kernel
>>         /bin/sh ../../libtool --mode=link gcc    
>> -L/w/jschen.01/grad/hailong/fftw/lib  -o grompp  topio.o toppush.o
>> topcat.o  topshake.o convparm.o tomorse.o  sorting.o splitter.o
>> dum_parm.o  readir.o add_par.o topexcl.o  toputil.o topdirs.o grompp.o
>> ../mdlib/libmd.la ../gmxlib/libgmx.la  -L/usr/local/X11/lib -lnsl
>> -lrfftw -lfftw -lm  -lXm -lXt  -lXext -lX11   
>> gcc -o grompp topio.o toppush.o topcat.o topshake.o convparm.o
>> tomorse.o sorting.o splitter.o dum_parm.o readir.o add_par.o topexcl.o
>> toputil.o topdirs.o grompp.o  -L/w/jschen.01/grad/hailong/fftw/lib
>> ../mdlib/.libs/libmd.a -L/usr/local/X11/lib ../gmxlib/.libs/libgmx.a
>> -lnsl /space/fftw/lib/librfftw.a /space/fftw/lib/libfftw.a -lm -lXm
>> -lXt -lXext -lX11
>> /usr/ccs/bin/ld: Unsatisfied symbols:
>>    XtOpenApplication (first referenced in
>> ../gmxlib/.libs/libgmx.a(calcgrid.o)) (code)
>> collect2: ld returned 1 exit status
>
>Looks like a Motif call, turn off Motif at the configure stage:
>./configure --without-motif-includes
>(or something like that, check using the -help flag)
>
>> *** Error exit code 1
>>  
>> Stop.
>> *** Error exit code 1
>>  
>> Stop.
>> *** Error exit code 1
>>  
>> Stop.
>> *** Error exit code 1
>>  
>> Stop.
>> 
>>  
>> Have no idea what else to do.
>>  
>> Thanks,
>>  
>> Hailong
>> 
>>  
>> thanks in advance,
>> 
>> 
>> 
>> ______________________________________________________________________
>> _______________________________________________
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>-- 
>David.
>________________________________________________________________________
>David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
>Dept. of Cell and Molecular Biology, Uppsala University.
>Husargatan 3, Box 596,  	75124 Uppsala, Sweden
>phone:	46 18 471 4205		fax: 46 18 511 755
>spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
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