[gmx-users] calculate rotation between monomers

[Dallas Warren]

>How can I stimate the relative rotation between two monomers?
>I mean, after MD simulation of a hetorodimer protein, a monomer rotates 
>with respect to the other. How can I quantify this?

Define a vector or plane in each monomer and measure the angled between them?

Catch ya,

Dr. Dallas Warren
Research Fellow
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9083
--------------------------------------------------------------------------
When the only tool you own is a hammer, every problem begins to resemble a nail.