[gmx-users] editconf and genbox

[Li Xiaoyi]

Hi all,

I am back.

I tried to put two molecules into a box of water. I used editconf -f -o
-box 4 4 4 -c and then genbox -cp -cs -p -o. But whatever box size I
used, the two molecules are always outside the box. why? What should I
do?

Thanks,
Xiaoyi