[gmx-users] Re: What is wrong with my .top file?
Nuno R. L. Ferreira
nunolf at ci.uc.pt
Fri Mar 19 19:46:02 CET 2004
On Friday 19 March 2004 04:45 pm, xiaobing tian wrote:
> Hi, Nuno,
> Thank you for your patience. I followed your instructions, and it works
> well. However, when i run grompp, it results the following error messages
> (see below). I can not figure out why. Any advices would be very
> calling C:\gromacs\bin\cpp...
> processing topology...
> processing coordinates...
> Fatal error: number of coordinates in coordinate file (speptide_b4em.gro,
> does not match topology (speptide.top, 0)
Are you following the speptide just like the instructions in the Getting
started "manual"? Or are you trying to solvate the peptide in a different
solvent than water, say DMSO?
Check the tail of your top file, it must have 1 molecule for the peptide and #
molecules for the solvent.
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