[gmx-users] fatal error message

[David]

On Thu, 2005-06-02 at 12:07 -0500, Lakhani, Ahmed Ashiqali wrote:
> Hi Lee,
> 
> Thank you for responeding.
> 
> I did run grompp, however I am getting this fatal error messages (look at
> the bottom of this message)  I think it has to do with cpp
> 
> "creating statusfile for 1 node...
> checking input for internal consistency...
> calling C:\Documents and Settings\Ahmed
> Lakhani\Desktop\gromacs\share\tutor\meth
> anol\cpp...
> 'C:\Documents' is not recognized as an internal or external command,
> operable program or batch file.
try removing the c:

or upgrade to linux.
> cpp exit code: 1
> Tried to execute: 'C:\Documents and Settings\Ahmed
> Lakhani\Desktop\gromacs\share
> \tutor\methanol\cpp  -IC:\Documents and Settings\Ahmed
> Lakhani\Desktop\gromacs\s
> hare\top  topol.top > gromppa00600'
> The 'C:\Documents and Settings\Ahmed
> Lakhani\Desktop\gromacs\share\tutor\methano
> l\cpp' command is defined in the .mdp file
> processing topology...
> processing coordinates...
> Fatal error: number of coordinates in coordinate file (conf.gro, 648)
>              does not match topology (topol.top, 0)"
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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