[gmx-users] genion

Dallas Warren dallas.warren at vcp.monash.edu.au
Tue Mar 1 22:50:42 CET 2005

>Probably genion placed solvent inside the protein, and you used genion 
>without the -random option. In that case it places the ion where the 
>potential is most favorable, which will usually be inside the protein.

Has that been fixed?  I haven't tried to use the option for awhile now, as 
last time I did that was broken and it simply placed all ions along one 
face of the box.

Catch ya,

Dr. Dallas Warren
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9083
When the only tool you own is a hammer, every problem begins to resemble a nail.
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